Detailed information of component protein


Summary

Component ID T6CP006449
Component protein type TssG
T6SS ID (Type) T6SS00611 insolico (Type i3)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (349 a.a.); Nucleotide sequence (1047 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS00455
Coordinate (Strand) 105631..106677 (+)
NCBI ID WP_003104969.1
RefSeq NC_017548
Uniprot ID A0A2C7A4F2_9PROT, A0A1F0IIY5_9PSED, A0A0H2ZJS0_PSEAB, Q9I743_PSEAE, A0A0C7CXW4_PSEAI, A0A3S4NBZ8_PSEFL
KEGG ID pau:PA14_01080, pae:PA0089
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 8.4e-109 21..319
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 349 a.a.    

>T6CP006449 NC_017548:105631-106677 [Pseudomonas aeruginosa M18] [TssG]
MAGEAGQPSEPLNLLAGMAAAPWDYDFFQALRRIECESPQLPRLGHSVRLADDPLRLGQKPDCTFAPSTLASVSQAGTAA
VPRLDQFFFGLTGPNGPLPLHLTEYARERQRNVNDATFKRFMDVFHHRLLTLFYRAWAEARPEISHDRIDDDYWSARLAA
LSGRGMPSLRGREPLADTARYYYTGHLAAQTRYPDGLRVILAEYFEVPVAVEEYVGQWLELPERSRLGVDSTSLGMDVCL
GTHVWDRQHKFRLRLGPLDLDQYQRFLPDGDHFVELAAWVAEYLGEELDWDVNLVLQRHEVPPLGLQGGGRLGFNTWLGD
PGQDARDLLLARQYATARPHEHKEKEHE*

  Nucleotide sequence: 1047 bp    

>T6CP006449 NC_017548:105631-106677 [Pseudomonas aeruginosa M18] [TssG]
ATGGCAGGCGAAGCCGGGCAGCCGTCCGAACCTCTGAACCTGCTCGCCGGGATGGCGGCGGCGCCCTGGGACTATGACTT
CTTCCAGGCGCTGCGGCGCATCGAGTGCGAGTCGCCGCAACTGCCGCGCCTCGGTCATTCGGTGCGGCTGGCGGACGACC
CGCTGCGTCTCGGGCAGAAGCCCGACTGCACCTTCGCGCCCTCGACCCTGGCCTCGGTGAGCCAGGCCGGCACCGCTGCG
GTGCCGCGCCTGGACCAGTTCTTCTTCGGCCTCACCGGCCCCAACGGGCCGCTGCCGCTGCACCTCACCGAATACGCCCG
GGAACGCCAGCGCAACGTCAACGACGCGACCTTCAAGCGCTTCATGGACGTCTTCCACCACCGCCTGCTGACCCTGTTCT
ACCGGGCCTGGGCCGAGGCGCGGCCGGAGATCAGCCACGACCGGATCGACGACGACTACTGGTCGGCGCGCCTCGCCGCG
CTCTCCGGGCGCGGCATGCCGAGCCTGCGGGGGCGCGAGCCGCTGGCGGATACCGCACGCTACTACTACACCGGCCACCT
CGCCGCGCAGACCCGCTACCCGGACGGCCTGCGGGTGATCCTCGCGGAGTATTTCGAGGTCCCGGTGGCGGTCGAGGAAT
ACGTCGGCCAATGGCTGGAGCTGCCCGAGCGCAGCCGCCTCGGCGTCGACTCGACGAGCCTGGGCATGGACGTCTGCCTG
GGCACCCACGTCTGGGACCGCCAGCACAAGTTCCGCCTGCGCCTGGGGCCGCTGGACCTCGATCAATACCAGCGCTTCCT
GCCCGACGGCGACCACTTCGTCGAGCTGGCCGCCTGGGTCGCCGAATACCTGGGCGAGGAGCTGGACTGGGACGTCAACC
TGGTCCTGCAACGCCACGAAGTACCCCCGCTGGGCCTGCAGGGCGGCGGGCGGCTCGGTTTCAACACCTGGCTGGGCGAT
CCCGGCCAGGACGCCAGGGATCTACTGCTGGCCCGCCAGTACGCCACTGCGCGGCCGCACGAGCACAAGGAGAAGGAACA
TGAGTGA