Detailed information of component protein
Summary
| Component ID | T6CP006447 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00611  (Type i3) |
| Strain | Pseudomonas aeruginosa M18 |
| Replicon | chromosome |
| Sequence | Protein sequence (170 a.a.); Nucleotide sequence (510 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PAM18_RS00445 |
| Coordinate (Strand) | 103302..103811 (+) |
| NCBI ID | WP_003104971.1 |
| RefSeq | NC_017548 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.3e-21 | 39..141 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 170 a.a.
>T6CP006447 NC_017548:103302-103811 [Pseudomonas aeruginosa M18] [TssE]
MAELTLQERLQPSLLDRLTDDEPGNLKEAAERRVLTLNQLKASVLRDLAWLFNTTSLFDHGPAARMPAGNSVLNYGLPAL
AGHTASSVDVHAIEALLTETIATFEPRIIRSSLRVRAQLLPGEMDHNALSFEIEGDLWAEPAPLRLLLTTNLDLETGHVR
VAQGERRRT*
MAELTLQERLQPSLLDRLTDDEPGNLKEAAERRVLTLNQLKASVLRDLAWLFNTTSLFDHGPAARMPAGNSVLNYGLPAL
AGHTASSVDVHAIEALLTETIATFEPRIIRSSLRVRAQLLPGEMDHNALSFEIEGDLWAEPAPLRLLLTTNLDLETGHVR
VAQGERRRT*
Nucleotide sequence: 510 bp
>T6CP006447 NC_017548:103302-103811 [Pseudomonas aeruginosa M18] [TssE]
ATGGCCGAACTGACCCTTCAGGAGCGCCTGCAGCCGTCGCTGCTCGACCGCCTCACCGACGACGAGCCGGGCAACCTCAA
GGAAGCCGCGGAGCGCCGGGTGCTGACCCTGAACCAGCTGAAGGCCTCGGTGCTGCGCGACCTGGCGTGGCTGTTCAACA
CCACTTCGCTGTTCGACCACGGCCCCGCCGCACGGATGCCGGCCGGCAACTCGGTGCTCAACTACGGGCTGCCGGCGCTG
GCCGGGCACACCGCGTCGAGCGTCGACGTGCATGCCATCGAGGCGCTGCTCACCGAGACCATCGCCACCTTCGAGCCGCG
CATCATCCGTTCTTCGTTGCGGGTGCGCGCGCAACTGCTGCCCGGCGAGATGGACCACAACGCCCTGAGCTTCGAGATCG
AGGGCGACCTCTGGGCCGAACCGGCGCCGCTGCGCCTGCTGCTGACCACCAACCTGGACCTGGAGACCGGCCACGTGCGC
GTCGCCCAGGGCGAGCGGAGGCGTACATGA
ATGGCCGAACTGACCCTTCAGGAGCGCCTGCAGCCGTCGCTGCTCGACCGCCTCACCGACGACGAGCCGGGCAACCTCAA
GGAAGCCGCGGAGCGCCGGGTGCTGACCCTGAACCAGCTGAAGGCCTCGGTGCTGCGCGACCTGGCGTGGCTGTTCAACA
CCACTTCGCTGTTCGACCACGGCCCCGCCGCACGGATGCCGGCCGGCAACTCGGTGCTCAACTACGGGCTGCCGGCGCTG
GCCGGGCACACCGCGTCGAGCGTCGACGTGCATGCCATCGAGGCGCTGCTCACCGAGACCATCGCCACCTTCGAGCCGCG
CATCATCCGTTCTTCGTTGCGGGTGCGCGCGCAACTGCTGCCCGGCGAGATGGACCACAACGCCCTGAGCTTCGAGATCG
AGGGCGACCTCTGGGCCGAACCGGCGCCGCTGCGCCTGCTGCTGACCACCAACCTGGACCTGGAGACCGGCCACGTGCGC
GTCGCCCAGGGCGAGCGGAGGCGTACATGA