Detailed information of component protein


Summary

Component ID T6CP006445
Component protein type TssC
T6SS ID (Type) T6SS00611 insolico (Type i3)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (499 a.a.); Nucleotide sequence (1497 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS00430
Coordinate (Strand) 100227..101723 (+)
NCBI ID WP_003104973.1
RefSeq NC_017548
Uniprot ID A0A1F0IIC2_9PSED, A0A6N0KU89_9PSED, A0A072ZSF3_PSEAI, A0A448BVR1_PSEFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.2e-135 69..371
VipB_2 PF18945.2 3.1e-43 381..492
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 499 a.a.    

>T6CP006445 NC_017548:100227-101723 [Pseudomonas aeruginosa M18] [TssC]
MAELSTENLAQGQTTTEQTSEFASLLLQEFKPKTERAREAVETAVRTLAEHALEQTSLISNDAIKSIESIIAAIDAKLTA
QVNLIMHHADFQQLESAWRGLHYLVNNTETDEQLKIRVLNISKPELHKTLKKFKGTTWDQSPIFKKLYEEEYGQFGGEPY
GCLVGDYYFDQSPPDVELLGEMAKISAAMHAPFISAASPTVMGMGSWQELSNPRDLTKIFTTPEYAGWRSLRESEDSRYI
GLTMPRFLARLPYGAKTDPVEEFAFEEETDGADSSKYAWANSAYAMAVNINRSFKLYGWCSRIRGVESGGEVQGLPAHTF
PTDDGGVDMKCPTEIAISDRREAELAKNGFMPLLHKKNTDFAAFIGAQSLQKPAEYDDPDATANANLAARLPYLFATCRF
AHYLKCIVRDKIGSFKEKDEMQRWLQDWILNYVDGDPAHSTETTKAQHPLAAAEVVVEEVEGNPGYYNSKFFLRPHYQLE
GLTVSLRLVSKLPSAKEA*

  Nucleotide sequence: 1497 bp    

>T6CP006445 NC_017548:100227-101723 [Pseudomonas aeruginosa M18] [TssC]
ATGGCCGAATTGAGCACCGAGAACCTGGCCCAGGGCCAGACCACCACCGAGCAGACCAGTGAGTTCGCCAGCCTGCTGCT
GCAGGAGTTCAAGCCCAAGACCGAGCGCGCCCGCGAAGCGGTGGAGACCGCCGTGCGGACCCTCGCCGAGCATGCCCTGG
AGCAGACCAGCCTGATCTCCAACGACGCGATCAAGTCGATCGAGTCGATCATCGCGGCGATCGACGCCAAGCTCACCGCG
CAGGTCAACCTGATCATGCACCACGCCGACTTCCAGCAACTGGAAAGCGCCTGGCGCGGCCTGCACTACCTGGTCAACAA
CACCGAGACCGACGAGCAACTGAAGATCCGCGTGCTGAACATCTCCAAGCCGGAGCTGCACAAGACCCTGAAGAAATTCA
AGGGCACCACCTGGGACCAGAGCCCGATCTTCAAGAAGCTCTACGAAGAGGAATACGGCCAGTTCGGCGGCGAGCCCTAT
GGCTGCCTGGTCGGCGACTACTACTTCGACCAGTCGCCGCCGGACGTCGAGCTGCTCGGCGAGATGGCGAAGATCTCCGC
CGCCATGCACGCGCCGTTCATTTCCGCCGCCTCGCCGACGGTGATGGGCATGGGTTCCTGGCAGGAACTGTCCAACCCGC
GCGACCTGACCAAGATCTTCACCACCCCGGAATACGCCGGCTGGCGTTCGCTGCGCGAGTCCGAGGACTCCCGCTACATC
GGCCTGACCATGCCGCGCTTCCTGGCGCGCCTGCCCTACGGGGCGAAGACCGATCCGGTGGAAGAGTTCGCCTTCGAGGA
AGAAACCGACGGCGCCGACAGCAGCAAGTACGCCTGGGCCAACTCGGCCTACGCGATGGCGGTCAACATCAACCGCTCCT
TCAAGCTCTACGGCTGGTGCTCGCGGATCCGCGGCGTCGAGTCCGGCGGCGAGGTGCAGGGCCTGCCGGCGCACACCTTC
CCCACCGACGACGGCGGCGTGGACATGAAGTGCCCGACCGAGATCGCCATTTCCGACCGCCGCGAGGCGGAGCTGGCGAA
GAACGGCTTCATGCCGCTGCTGCACAAGAAGAACACCGACTTCGCCGCCTTCATCGGCGCGCAGTCGCTGCAGAAACCCG
CCGAGTACGACGATCCGGACGCCACCGCCAACGCCAACCTGGCGGCGCGCCTGCCCTACCTGTTCGCCACCTGCCGCTTC
GCCCATTACCTGAAGTGCATCGTTCGCGACAAGATCGGTTCCTTCAAGGAGAAGGACGAGATGCAGCGCTGGCTGCAGGA
CTGGATCCTCAACTACGTCGACGGCGACCCGGCCCACTCCACCGAGACCACCAAGGCCCAGCACCCGCTGGCGGCGGCCG
AAGTGGTGGTGGAGGAAGTCGAAGGCAATCCGGGTTACTACAACTCGAAGTTCTTCCTTCGCCCGCACTACCAGCTCGAG
GGACTGACGGTATCGCTACGCCTGGTATCCAAGCTGCCTTCGGCCAAAGAGGCCTGA