Detailed information of component protein
Summary
| Component ID | T6CP006444 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00611  (Type i3) |
| Strain | Pseudomonas aeruginosa M18 |
| Replicon | chromosome |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | PAM18_RS00425 |
| Coordinate (Strand) | 99696..100214 (+) |
| NCBI ID | WP_003083666.1 |
| RefSeq | NC_017548 |
| Uniprot ID | V6A7U3_PSEAI, A0A1C7BAN4_PSEAI, A0A1F0IIN2_9PSED, A0A0H2ZK88_PSEAB, TSSB1_PSEAE, A0A6N0KVW0_9PSED, A0A072ZG09_PSEAI, A0A3S4N1E0_PSEFL |
| KEGG ID | pau:PA14_01010, pae:PA0083 |
| PDB ID | 4UQZ, 4UQY, 5N8N |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 2.3e-57 | 12..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 173 a.a.
>T6CP006444 NC_017548:99696-100214 [Pseudomonas aeruginosa M18] [TssB]
MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPQAAVADRKFLEIDVDNFDARLKAMKPR
VAFNVPNVLTGEGNLSLDITFESMDDFSPAAVARKVDSLNKLLEARTQLANLLTYMDGKTGAEEMIMKAIKDPALLQALA
SAPKPKDDEPQA*
MGSTTSSQKFIARNRAPRVQIEYDVELYGAEKKVQLPFVMGVMADLAGKPAEPQAAVADRKFLEIDVDNFDARLKAMKPR
VAFNVPNVLTGEGNLSLDITFESMDDFSPAAVARKVDSLNKLLEARTQLANLLTYMDGKTGAEEMIMKAIKDPALLQALA
SAPKPKDDEPQA*
Nucleotide sequence: 519 bp
>T6CP006444 NC_017548:99696-100214 [Pseudomonas aeruginosa M18] [TssB]
ATGGGAAGCACTACCAGCAGTCAGAAGTTCATCGCCAGGAACCGGGCGCCACGCGTGCAGATCGAGTACGACGTGGAGTT
GTACGGTGCCGAGAAGAAGGTCCAGCTGCCCTTCGTCATGGGCGTCATGGCCGACCTCGCCGGCAAGCCCGCCGAACCCC
AGGCGGCGGTCGCCGACCGCAAGTTCCTGGAGATCGACGTGGACAACTTCGATGCCCGGCTGAAGGCGATGAAGCCGCGG
GTGGCCTTCAACGTACCGAACGTGCTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAGAGCATGGACGACTT
CAGCCCCGCCGCGGTGGCGCGCAAGGTCGATTCGCTGAACAAGCTGCTCGAGGCGCGTACCCAGCTGGCCAACCTGCTGA
CCTACATGGACGGCAAGACCGGTGCCGAGGAAATGATCATGAAGGCGATCAAGGACCCGGCCCTGCTTCAGGCCCTGGCC
AGCGCGCCGAAGCCCAAAGACGACGAGCCGCAGGCGTAA
ATGGGAAGCACTACCAGCAGTCAGAAGTTCATCGCCAGGAACCGGGCGCCACGCGTGCAGATCGAGTACGACGTGGAGTT
GTACGGTGCCGAGAAGAAGGTCCAGCTGCCCTTCGTCATGGGCGTCATGGCCGACCTCGCCGGCAAGCCCGCCGAACCCC
AGGCGGCGGTCGCCGACCGCAAGTTCCTGGAGATCGACGTGGACAACTTCGATGCCCGGCTGAAGGCGATGAAGCCGCGG
GTGGCCTTCAACGTACCGAACGTGCTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAGAGCATGGACGACTT
CAGCCCCGCCGCGGTGGCGCGCAAGGTCGATTCGCTGAACAAGCTGCTCGAGGCGCGTACCCAGCTGGCCAACCTGCTGA
CCTACATGGACGGCAAGACCGGTGCCGAGGAAATGATCATGAAGGCGATCAAGGACCCGGCCCTGCTTCAGGCCCTGGCC
AGCGCGCCGAAGCCCAAAGACGACGAGCCGCAGGCGTAA