Detailed information of component protein


Summary

Component ID T6CP006443
Component protein type TssA
T6SS ID (Type) T6SS00611 insolico (Type i3)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (345 a.a.); Nucleotide sequence (1035 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS00420
Coordinate (Strand) 98573..99607 (+)
NCBI ID WP_014602338.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 1.3e-33 8..131
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 345 a.a.    

>T6CP006443 NC_017548:98573-99607 [Pseudomonas aeruginosa M18] [TssA]
VLDVPVLLAAVSPDSPCGDDLEYDAAFLELERIAQGQPERQMGDAVLPAEPPEWPRVRALASELFGRSKDLRVANLLLQS
NVALDGLDGLADGLLLVRELLGQYWDGVYPLLDADDDNDPTFRINALTGLVAEPLLQLVWAIPLVRSRAFGPVNLRAALN
AAGLQRFASETLSPEQIAGAFADADADALAATRRALEGALEHALAIESGVAERVGSAQGLDLGPLRQLLRQALQVFDLYG
PQGADESLAPGAEAVADEQVGAAPVAAVAAPAPRASGEIANREDVLRQLDRLLEYYVRHEPSSPVPVLLKRAKTLVTADF
AEIVRNLIPDGISQFETLRGPESE*

  Nucleotide sequence: 1035 bp    

>T6CP006443 NC_017548:98573-99607 [Pseudomonas aeruginosa M18] [TssA]
GTGCTGGATGTACCCGTTTTGCTGGCTGCCGTATCCCCGGACTCGCCCTGTGGCGACGATCTGGAGTACGACGCCGCGTT
CCTCGAACTCGAACGCATCGCCCAGGGCCAACCCGAGCGCCAGATGGGCGATGCCGTGCTGCCCGCCGAACCACCGGAGT
GGCCGCGCGTACGCGCGCTGGCCAGCGAACTGTTCGGCCGTAGCAAGGACCTGCGGGTAGCCAACCTGCTGCTGCAGAGC
AACGTCGCCCTCGACGGCCTGGACGGGCTCGCCGACGGCCTGCTGCTGGTCCGCGAGCTGCTCGGCCAGTACTGGGACGG
CGTCTATCCGCTGCTCGACGCCGATGACGACAACGACCCCACCTTCCGTATCAACGCCCTCACCGGCCTGGTCGCCGAAC
CGCTGCTGCAACTGGTCTGGGCGATCCCGCTGGTGCGCTCGCGGGCGTTCGGCCCGGTCAACCTGCGCGCCGCGCTGAAC
GCCGCCGGGCTGCAACGCTTCGCCAGCGAGACCCTGAGTCCCGAGCAGATCGCCGGCGCCTTCGCCGATGCCGACGCCGA
TGCGCTGGCCGCCACCCGGCGCGCCCTGGAAGGCGCCCTGGAACATGCCCTGGCCATCGAGAGCGGCGTCGCCGAACGGG
TCGGCTCGGCCCAGGGACTCGACCTCGGTCCCCTTCGTCAACTGCTGCGCCAGGCCCTCCAGGTGTTCGACCTGTACGGC
CCGCAGGGCGCCGACGAGTCCTTGGCGCCGGGTGCCGAGGCGGTCGCCGACGAGCAGGTGGGCGCCGCGCCTGTCGCAGC
CGTCGCCGCGCCGGCACCGCGAGCCAGCGGCGAGATCGCCAACCGCGAAGACGTCCTGCGCCAGCTCGACCGCCTGCTCG
AGTATTACGTTCGCCACGAGCCGTCGAGCCCGGTGCCGGTGCTGCTCAAGCGCGCCAAGACACTGGTGACGGCCGACTTC
GCCGAAATCGTGAGGAATCTCATCCCCGATGGGATTTCCCAGTTCGAAACCCTGCGAGGCCCGGAAAGCGAGTAA