Detailed information of component protein


Summary

Component ID T6CP006442
Component protein type TssJ
T6SS ID (Type) T6SS00611 insolico (Type i3)
Strain Pseudomonas aeruginosa M18
Replicon chromosome
Sequence Protein sequence (155 a.a.); Nucleotide sequence (465 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PAM18_RS00410
Coordinate (Strand) 96179..96643 (-)
NCBI ID WP_004351964.1
RefSeq NC_017548
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1.2e-40 27..143
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 155 a.a.    

>T6CP006442 NC_017548:c96643-96179 [Pseudomonas aeruginosa M18] [TssJ]
MQKLIVALFGLLLAACSSSPPETPPTRVVIWLHAAPNLNPSAAGQAAPLRLRLYELKKDTAFGRADYFALTDNAQSTLGG
DLVEQDEFLLRPGEERRIERTLDEQTRQLGFVAAYRDLDRATWRQVLAVPGQRTSHLDITLGAQAIGIVARPAP*

  Nucleotide sequence: 465 bp    

>T6CP006442 NC_017548:c96643-96179 [Pseudomonas aeruginosa M18] [TssJ]
ATGCAGAAACTGATCGTCGCGCTGTTCGGGCTGCTGCTCGCCGCCTGTTCGTCCAGCCCGCCGGAAACCCCGCCGACCCG
GGTGGTGATCTGGCTCCACGCCGCACCGAACCTCAACCCGTCCGCCGCCGGCCAGGCGGCGCCGCTGCGCCTGCGGCTGT
ACGAGCTGAAGAAAGACACCGCGTTCGGCCGCGCCGACTACTTCGCCCTCACCGACAACGCCCAGTCGACCCTCGGTGGC
GACCTGGTGGAGCAGGACGAGTTCCTCCTGCGTCCGGGCGAGGAACGGCGCATCGAACGCACGCTCGACGAGCAGACCCG
CCAGCTCGGTTTCGTCGCCGCCTACCGCGACCTCGACCGCGCCACCTGGCGCCAGGTCCTCGCCGTGCCGGGGCAACGCA
CCAGCCATCTCGACATCACGCTCGGCGCGCAGGCCATCGGCATCGTCGCGCGTCCCGCGCCCTGA