Detailed information of component protein


Summary

Component ID T6CP005835
Component protein type TssD
T6SS ID (Type) T6SS00551 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Replicon chromosome
Sequence Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) STM14_RS01985
Coordinate (Strand) 319364..319849 (+)
NCBI ID WP_000119443.1
RefSeq NC_016856
Uniprot ID A0A5I5GXK7_SALET, A0A0R9MBY7_SALNE, A0A3V4SNI9_SALET, A0A5X9XBL6_SALET, A0A5I8HRI6_SALET, A0A658INA7_SALNE, A0A3U7ZP19_SALET, A0A5J1MEU9_SALET, A0A3G3E1V0_SALET, A0A3V2W8T7_SALHA, A0A5J2V1J0_SALET, A0A5H8VQP4_SALET, A0A3T3GE73_SALET, A0A3V9CKX5_SALEN, A0A5W4FGC6_SALTM, A0A7U1KSF1_SALET, A0A3V3CMB6_SALET, A0A5I5YZ13_SALET, A0A418Z768_SALET, A0A3V9S5F5_SALET, A0A3Z1TWF3_SALET, A0A659NKJ7_SALET, A0A5W8CCN2_SALET, A0A6C8LMB4_SALET, A0A5W0WR40_SALET, A0A0H3N8E4_SALTS, A0A3V4QGV5_SALET, A0A3Z3GFN9_SALET, A0A4Q8P5U2_SALET, A0A4P7XNK4_SALET, A0A5I4KPC0_SALET, A0A3U8PB28_SALBE, A0A3Y7QVA5_SALDE, A0A3V5TT36_SALSE, A0A4Y5MTH1_SALET, A0A0M0PMZ4_SALER, A0A2T9Q8Z8_SALET, A0A2T8QQ62_SALET, A0A5H7QMM1_SALET, A0A0H3BNU5_SALNS, A0A315GLP3_SALET, A0A6C6ZQA3_SALHS, A0A2R4DDA1_SALET, A0A5H8DZM1_SALET, A0A3W0FE73_SALET, A0A5J1TH92_SALET, A0A5H8FNT9_SALET, A0A6C7I7W1_SALTD, A0A605YLE1_SALET, A0A5H8HCD1_SALBL, A0A3V7I8V8_SALET, A0A5W3E0X3_SALAN, A0A0F6AX81_SALT1, A0A3V6WZN6_SALET, A0A3V4CU06_SALIN, A0A6C8G560_SALIN, A0A3T3EXA4_SALMU, A0A3V4QDJ2_SALTH, A0A265B9N7_SALET, A0A5I6QGW9_SALET, A0A3U8IVC3_SALET, H9L4J8_SALTM, E8XIU4_SALT4, A0A5H6FJ66_SALET, A0A751ZZ73_SALDU, A0A6C7AGX7_SALTU, Q93IS3_SALTY
KEGG ID see:SNSL254_A0305, seb:STM474_0291, seo:STM14_0327, seni:CY43_01395, sej:STMUK_0282, sev:STMMW_02841, stm:STM0279, sey:SL1344_0274, seh:SeHA_C0317
PDB ID 5XEU
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 2e-38 6..136
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-161 MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIPQAILVMRKAGGNPLEYLKYTFTDLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9848 - -


  Protein sequence: 162 a.a.    

>T6CP005835 NC_016856:319364-319849 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] [TssD]
MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*

  Nucleotide sequence: 486 bp    

>T6CP005835 NC_016856:319364-319849 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] [TssD]
ATGTCTTATGACATTTTTCTGAAAATTGACGGCATTGACGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGTCTCGGTTCCGGTAAGGTCTCCGTCA
CTAATCTTTCATTTGAACATTACATCGATCGCGCCAGCCCGAACCTGTTCAAATACTGCTCTTCCGGTAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTACACTTTCACAGATCTGATTATTGC
AATGGTATCGCCCAGCGGAAGCCAGGGAGGGGAAATTGCGTCTCGCGAATCAATTGAACTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGTGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA