Detailed information of component protein

Summary

Component ID	T6CP005834
Component protein type	TssD
T6SS ID (Type)	T6SS00551 (Type i3)
Strain	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Replicon	chromosome
Sequence	Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference	[1] Liu J, Guo JT, Li YG, et al. The type VI secretion system gene cluster of Salmonella typhimurium: required for full virulence in mice. J Basic Microbiol. 2013 Jul;53(7):600-7. doi: 10.1002/jobm.201200047. Epub 2012 Sep 7. PMID: 22961625 [2] Pezoa D, Yang HJ, Blondel CJ, et al. The type VI secretion system encoded in SPI-6 plays a role in gastrointestinal colonization and systemic spread of Salmonella enterica serovar Typhimurium in the chicken. PLoS One. 2013 May 14;8(5):e63917. doi: 10.1371/journal.pone.0063917. Print 2013. PMID: 23691117

Experimental investigation has been performed on this T6SS

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External database links

Locus tag (Gene)	STM14_RS01970
Coordinate (Strand)	317578..318063 (+)
NCBI ID	WP_000312802.1
RefSeq	NC_016856
Uniprot ID	A0A5I6CT62_SALET, A0A3V8SQG5_SALNE, A0A3V4SNL6_SALET, A0A5I6PFH1_SALET, A0A3Y0E5N7_SALMO, A0A5W0TBG7_SALET, A0A3V5VSD3_SALET, A0A5I8HRD5_SALET, A0A5X3P5J1_SALET, A0A658IDZ6_SALNE, A0A3U7ZP36_SALET, A0A5J1MFE6_SALET, A0A4P3D3Q8_SALET, A0A3V2W8U0_SALHA, A0A5I4Z1J1_SALET, A0A5I6UWE6_SALET, A0A5J2D5F5_SALET, A0A5I0QN89_SALET, A0A3T3GE54_SALET, A0A3V7LQR6_SALEN, A0A5W0DQX7_SALTM, A0A5I1ASE4_SALET, A0A3V3U6L9_SALET, A0A5H7K2R3_SALET, A0A418Z7G5_SALET, A0A2T8L445_SALET, A0A3V6S6G6_SALET, A0A659QGG9_SALET, A0A447JMT2_SALET, A0A6C8LM43_SALET, A0A5X9WJ36_SALET, A0A0H3N9H6_SALTS, A0A713Y9R3_SALTI, A0A3V4QGV7_SALET, A0A3Z3GFI7_SALET, A0A4Q8P7U2_SALET, A0A730F0T8_SALET, A0A4P9T1P7_SALET, A0A5I4KN78_SALET, A0A602DIL2_SALET, A0A3U8PAY4_SALBE, A0A3V8R736_SALDE, A0A3V8KLR0_SALON, A0A3V2I7V6_SALSE, A0A5I3T975_SALET, A0A4Y6MGZ6_SALET, F5CQ80_SALER, A0A5H6IBS2_SALET, A0A5H9Y4X7_SALET, A0A2T9Q939_SALET, A0A2T8QQ42_SALET, A0A5I2N2L0_SALET, A0A3T2WCP6_SALET, A0A0H3BMP9_SALNS, A0A5W3GG87_SALET, A0A315HY59_SALET, A0A6C6ZM03_SALHS, A0A494J0V9_SALET, A0A2R4DDD4_SALET, A0A5H8DZI7_SALET, A0A3W0FF70_SALET, A0A5J1TKM6_SALET, A0A5I4FCR4_SALET, A0A6C7I7B1_SALTD, A0A605YMV9_SALET, A0A3V7I8U6_SALET, A0A3U5N7E4_SALET, A0A3Y5SAH5_SALAN, A0A0F6AX78_SALT1, A0A3U3P365_SALET, A0A4V6FMK1_SALET, A0A2T8XXQ6_SALIN, A0A6C8G4T3_SALIN, A0A3T3EXB1_SALMU, A0A3V7ITE6_SALRU, A0A3V3G504_SALTH, A0A265BA06_SALET, A0A5X2LZH3_SALET, A0A1S0ZM11_SALET, Q93IS5_SALTI, H9L4J2_SALTM, E8XIU1_SALT4, A0A5W5A8I1_SALET, A0A5I1SRP0_SALET, A0A5I4BD41_SALET, A0A6W0NVJ9_SALRU, A0A636X8W7_SALDU, A0A6C7AHL0_SALTU, Q7CR58_SALTY
KEGG ID	sty:STY0302, sev:STMMW_02791, sey:SL1344_0271, seb:STM474_0288, seni:CY43_01380, stt:t2584, seh:SeHA_C0314, sej:STMUK_0279, see:SNSL254_A0302, stm:STM0276, seo:STM14_0324
PDB ID	5XHH

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Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	6.9e-38	6..136

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Transmembrane helices

• Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-161	MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI

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Signal peptides

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9900	-	-

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  Protein sequence: 162 a.a.    Download


  Nucleotide sequence: 486 bp    Download