Detailed information of component protein


Summary

Component ID T6CP005830
Component protein type TssE
T6SS ID (Type) T6SS00551 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Replicon chromosome
Sequence Protein sequence (165 a.a.); Nucleotide sequence (495 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) STM14_RS01930
Coordinate (Strand) 309322..309816 (-)
NCBI ID WP_000108007.1
RefSeq NC_016856
Uniprot ID A0A5H5K4T6_SALET, A0A0R9N6C9_SALNE, A0A3V4SNW1_SALET, A0A3V2EXH1_SALMO, A0A5X9XBT0_SALET, A0A3V5VSA4_SALET, V7ILA6_SALET, M7S6R3_SALDU, A0A5W7S0Q0_SALET, A0A5I8X4C7_SALET, A0A2C9P3F7_SALET, A0A5I8HT55_SALET, A0A658INB7_SALNE, A0A3U7ZNZ9_SALET, A0A5I5T2E9_SALET, A0A3G3E1W0_SALET, A0A5I3HRR0_SALET, A0A5I0QTY2_SALET, A0A3T3GE95_SALET, A0A3V9CLB2_SALEN, A0A5W0E4D4_SALTM, A0A7U1Q6M8_SALET, A0A3V3CMG8_SALET, A0A5I5YXX7_SALET, A0A418Z759_SALET, A0A2T8L4B1_SALET, A0A3V5ZAW9_SALET, A0A659N413_SALET, A0A447JMT7_SALET, A0A5I0SMM3_SALET, A0A5J0CNA6_SALET, A0A5X5NR36_SALET, A0A5H6P2W3_SALET, A0A6C8LNN6_SALET, A0A5X9WJ34_SALET, A0A0H3N8D2_SALTS, A0A5H5T1C6_SALET, A0A3Z3GFF1_SALET, A0A4Q8P4Q9_SALET, A0A736NPN9_SALET, A0A4P9T0R3_SALET, A0A5I4KMJ6_SALET, A0A602DKR6_SALET, A0A3U8PAJ8_SALBE, A0A3V8R741_SALDE, A0A3V8Z1Y5_SALON, A0A401AUE7_SALSE, A0A5I2DSQ4_SALET, A0A4Y5MVB2_SALET, A0A0M0PMY4_SALER, Q57SZ1_SALCH, A0A2T9Q906_SALET, A0A2T8QSG5_SALET, A0A5H8UN67_SALET, A0A3V8D959_SALET, A0A5I8GX02_SALET, A0A0H3BTC0_SALNS, A0A4Z0NMP8_SALET, A0A6C6ZU42_SALDC, A0A315GLP4_SALET, A0A494J144_SALET, C0Q6N7_SALPC, A0A2R4DDC9_SALET, A0A702BAA3_SALET, A0A5J0IU80_SALET, A0A5Z7HIL1_SALET, A0A5J1TH83_SALET, A0A5I0RRS8_SALET, A0A6C7I6S6_SALTD, A0A605YLH3_SALET, A0A3V3ZGH8_SALET, A0A5I2K3H6_SALBL, A0A3V7I8W0_SALET, A0A3U5N781_SALET, A0A0F6AX70_SALT1, A0A3U9NBV0_SALET, A0A4U8ABH3_SALET, A0A752MF98_SALGL, A0A2T8XXP9_SALIN, A0A6C8G3Q6_SALIN, A0A3T3EX63_SALMU, A0A5W9CQH2_SALRU, A0A3V4QCZ7_SALTH, A0A3V4FLR7_SALET, A0A3U8IVL6_SALET, H9L4H3_SALTM, E8XIT3_SALT4, A0A2T8WWL4_SALET, A0A5H8T2S8_SALET, A0A5H6FK49_SALET, A0A3T3IKE8_SALDU, A0A3Z2FCU3_SALTU, Q93IT2_SALTY
KEGG ID sev:STMMW_02671, sey:SL1344_0263, seni:CY43_01350, seb:STM474_0280, sed:SeD_A0292, sec:SCH_0264, seo:STM14_0316, sej:STMUK_0271, sei:SPC_0278, stm:STM0269, see:SNSL254_A0294
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 1.5e-22 39..143
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-164 MSTSRFTPANHLLPTLFDRLCDNAPYQKIDRDISVTPVQLKEIIRRDLSFLLNTISHEGDIDARRYPQAAASVLNYGLPPLAGSFMYEHKWDDISEAIRRAIIRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSRITFF


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9903 - -


  Protein sequence: 165 a.a.    

>T6CP005830 NC_016856:c309816-309322 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] [TssE]
MSTSRFTPANHLLPTLFDRLCDNAPYQKIDRDISVTPVQLKEIIRRDLSFLLNTISHEGDIDARRYPQAAASVLNYGLPP
LAGSFMYEHKWDDISEAIRRAIIRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSR
ITFF*

  Nucleotide sequence: 495 bp    

>T6CP005830 NC_016856:c309816-309322 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] [TssE]
ATGAGCACGTCTCGTTTTACACCCGCTAACCACCTGCTGCCCACGCTGTTTGATCGGCTGTGTGACAATGCTCCGTATCA
GAAAATTGACCGGGATATCAGCGTCACGCCGGTACAACTGAAGGAGATCATTCGCCGGGATCTCTCCTTTTTGCTCAATA
CCATTAGCCACGAGGGTGACATCGACGCCCGGCGCTATCCGCAGGCGGCGGCGTCAGTGCTCAACTATGGCCTGCCGCCG
CTGGCGGGCAGCTTTATGTATGAGCATAAGTGGGACGATATCAGCGAGGCGATCCGGCGCGCCATTATCCGTTTCGAACC
CCGGCTGAACGCCGCCACACTCAGGGTCACGCCCTTGCTCGATAAAACCCGGCAGGGTAGCTATAACACGCTACAGTTTG
AAATTCGCGGACAAATTCTGACGCAGCCGTATCCCACGGAGTTTCTGGTACGCAGCGCGCTGGATATGGAGCTGAGCCGC
ATTACGTTCTTTTAA