Detailed information of component protein


Summary

Component ID T6CP005828
Component protein type TssG
T6SS ID (Type) T6SS00551 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Replicon chromosome
Sequence Protein sequence (332 a.a.); Nucleotide sequence (996 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) STM14_RS01920
Coordinate (Strand) 306431..307426 (-)
NCBI ID WP_000145244.1
RefSeq NC_016856
Uniprot ID A0A3Y2DE54_SALNE, A0A3V4SNL3_SALET, V7IHK3_SALET, A0A625WME0_SALEN, A0A5Z6QPE0_SALTM, A0A5H7K2S0_SALET, A0A736ZC53_SALET, A0A3Z1TWE1_SALET, A0A0H3N7W3_SALTS, A0A3Z3GGX7_SALET, A0A4P9SZ48_SALET, A0A3V6WIW7_SALDE, A0A0M0PTK9_SALER, A0A2T9Q8Y1_SALET, A0A2T8QSD6_SALET, A0A315GQS1_SALET, A0A6C7I7A2_SALTD, A0A740ZYN1_SALET, A0A0F6AX68_SALT1, A0A3V0RQ73_SALET, A0A5X9A325_SALIN, A0A3Z3HRN2_SALMU, A0A3V2ZGX7_SALET, A0A3U8IVM4_SALET, A0A0D6HFN9_SALTM, E8XIT1_SALT4, A0A3Z2FCS9_SALTU, Q8ZRM0_SALTY
KEGG ID sev:STMMW_02651, seo:STM14_0314, sej:STMUK_0269, stm:STM0267, seb:STM474_0278, sey:SL1344_0261, seni:CY43_01340
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 7.3e-91 12..309
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-331 MTGALNQAQKTPWRYGFLNLMRRVDAQLCDTPAGSIWQPRMEKFRLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWGPNGPLPLHYTELALNRSESRHDPTLVHFSNIFHHRWLTQFWQAWRSAQSAGGGLDKPEHDRFAFYIASLSGQDLRESAESPLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGTPAQSSVLGNGALIGQAVPDMQYKFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTGMIFEPEHGLTH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9825 - -


  Protein sequence: 332 a.a.    

>T6CP005828 NC_016856:c307426-306431 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] [TssG]
MTGALNQAQKTPWRYGFLNLMRRVDAQLCDTPAGSIWQPRMEKFRLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWG
PNGPLPLHYTELALNRSESRHDPTLVHFSNIFHHRWLTQFWQAWRSAQSAGGGLDKPEHDRFAFYIASLSGQDLRESAES
PLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGTPAQSSVLGNGALIGQAVPDMQY
KFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIGFEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTG
MIFEPEHGLTH*

  Nucleotide sequence: 996 bp    

>T6CP005828 NC_016856:c307426-306431 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] [TssG]
ATGACCGGCGCTCTCAACCAGGCGCAGAAAACCCCCTGGCGTTACGGATTCCTGAACCTGATGCGGCGCGTGGATGCCCA
GCTCTGTGATACTCCGGCAGGCAGTATCTGGCAGCCACGGATGGAAAAATTCCGTCTGGGACAGACGCCGACGATGACCT
TTGCGCCACGGGAAATCGCCCAGGTCAGCTGGCAGGATGGACGCCTGCACCTGAGCCTGTACAGCCTCGGACTATGGGGG
CCAAACGGCCCGTTGCCGCTGCACTATACCGAGCTGGCACTGAACCGCTCAGAGAGTCGTCACGATCCGACGCTGGTTCA
TTTTTCCAATATTTTTCACCACCGCTGGCTGACGCAGTTCTGGCAGGCATGGCGCAGCGCCCAGTCCGCTGGTGGCGGGC
TGGACAAACCGGAACACGACCGTTTTGCGTTTTATATCGCCAGTCTCAGCGGGCAGGATCTACGGGAAAGCGCCGAAAGC
CCGCTGTCAGATCATGTTCGCCTGGCAGCCTCCGCCCATCTGGTACGCGAATCGCGCAATCCTGACGGGCTGGCCGCCAC
GCTGGCGCACTATTTCAGCGTACCTTTTGCGGTGAAAGAATTCGCCCTGCACTGGATAACGGTGGCGAACGATGAAATCA
CCCGTCTGGGCACGCCCGCGCAGTCTTCGGTGCTGGGCAACGGGGCGCTTATCGGCCAGGCCGTACCGGATATGCAGTAC
AAATTCCGGCTAATTATCGGCCCGCTCACGCTGGAGGATTACCTGCGTTTTCTGCCCGGCGGCAACAATCTGCCCGTGCT
GACAGAACTGGTGCGTACGTTCATCGGTTTTGAATATTGCTGGGAAATTGAGCTGCAGTTGAAGCCTCATGCCGCACCGC
CTGCGGTGATCGGCGGCGCGCAGCGGCTTGGCTGGACGGCCTGGGCAGGTAAAGCCATGCATGACCGTCCGGTGACCGGC
ATGATTTTTGAACCTGAACACGGCTTAACCCACTGA