Detailed information of component protein
Summary
| Component ID | T6CP005806 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00548  (Type i2) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| Replicon | chromosome |
| Sequence | Protein sequence (181 a.a.); Nucleotide sequence (543 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | KPHS_23190 |
| Coordinate (Strand) | 2352718..2353260 (+) |
| NCBI ID | YP_005226619.1 |
| RefSeq | NC_016845 |
| Uniprot ID | A0A0H3GS07_KLEPH |
| KEGG ID | kpm:KPHS_23190 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 1.9e-27 | 47..163 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-180 | VLRISLTKTACLLPLLALCLSGCGLTQRVSEGTKSAFNAVFYKKINTLHLDFTAREALNTDARENHSLSEPVVVRIYQLKDRQTFDRLVYQQLLEEGDILLAADLLASRDVVIGPGGDASLNMPLEAEATFVAVVGLFRHPDTQRNTWKQVLAREELDPDKPRIFTAEHNQLRLRPEAAK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9981 | pos: 22-23. LSG-CG. | VLRISLTKTACLLPLLALCLSG |
Protein sequence: 181 a.a.
>T6CP005806 NC_016845:2352718-2353260 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssJ]
VLRISLTKTACLLPLLALCLSGCGLTQRVSEGTKSAFNAVFYKKINTLHLDFTAREALNTDARENHSLSEPVVVRIYQLK
DRQTFDRLVYQQLLEEGDILLAADLLASRDVVIGPGGDASLNMPLEAEATFVAVVGLFRHPDTQRNTWKQVLAREELDPD
KPRIFTAEHNQLRLRPEAAK*
VLRISLTKTACLLPLLALCLSGCGLTQRVSEGTKSAFNAVFYKKINTLHLDFTAREALNTDARENHSLSEPVVVRIYQLK
DRQTFDRLVYQQLLEEGDILLAADLLASRDVVIGPGGDASLNMPLEAEATFVAVVGLFRHPDTQRNTWKQVLAREELDPD
KPRIFTAEHNQLRLRPEAAK*
Nucleotide sequence: 543 bp
>T6CP005806 NC_016845:2352718-2353260 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssJ]
GTGTTACGTATAAGTTTGACTAAAACCGCCTGTCTGCTGCCCCTGCTTGCGCTTTGCCTGAGCGGATGCGGACTCACCCA
GCGCGTCTCGGAGGGAACAAAGTCTGCCTTCAACGCCGTTTTTTATAAGAAAATTAATACGCTGCATCTGGACTTTACCG
CGCGCGAAGCGCTCAACACCGATGCCAGAGAGAATCACTCGCTCTCTGAACCGGTGGTGGTGCGCATCTATCAGCTTAAA
GATCGCCAGACCTTTGACCGGCTGGTTTACCAGCAGCTGCTGGAGGAGGGGGATATTCTGCTCGCCGCCGATCTCCTCGC
CAGTCGCGATGTGGTGATCGGTCCCGGAGGGGACGCCAGTCTGAATATGCCGCTGGAAGCGGAGGCGACGTTCGTGGCGG
TTGTCGGCCTGTTCCGCCATCCGGACACACAAAGAAATACCTGGAAGCAGGTGCTGGCGCGTGAGGAATTGGATCCGGAC
AAGCCGCGCATTTTCACCGCCGAACACAACCAGCTACGGCTCAGGCCTGAAGCGGCGAAGTAA
GTGTTACGTATAAGTTTGACTAAAACCGCCTGTCTGCTGCCCCTGCTTGCGCTTTGCCTGAGCGGATGCGGACTCACCCA
GCGCGTCTCGGAGGGAACAAAGTCTGCCTTCAACGCCGTTTTTTATAAGAAAATTAATACGCTGCATCTGGACTTTACCG
CGCGCGAAGCGCTCAACACCGATGCCAGAGAGAATCACTCGCTCTCTGAACCGGTGGTGGTGCGCATCTATCAGCTTAAA
GATCGCCAGACCTTTGACCGGCTGGTTTACCAGCAGCTGCTGGAGGAGGGGGATATTCTGCTCGCCGCCGATCTCCTCGC
CAGTCGCGATGTGGTGATCGGTCCCGGAGGGGACGCCAGTCTGAATATGCCGCTGGAAGCGGAGGCGACGTTCGTGGCGG
TTGTCGGCCTGTTCCGCCATCCGGACACACAAAGAAATACCTGGAAGCAGGTGCTGGCGCGTGAGGAATTGGATCCGGAC
AAGCCGCGCATTTTCACCGCCGAACACAACCAGCTACGGCTCAGGCCTGAAGCGGCGAAGTAA