Detailed information of component protein
Summary
| Component ID | T6CP005803 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS00548  (Type i2) |
| Strain | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| Replicon | chromosome |
| Sequence | Protein sequence (1142 a.a.); Nucleotide sequence (3426 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 2344840..2348265 (+) |
| NCBI ID | YP_005226614.1 |
| RefSeq | NC_016845 |
| Uniprot ID | A0A0H3GS02_KLEPH |
| KEGG ID | kpm:KPHS_23140 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-12 | MDNVNKPAAISV |
| Transmembrane helix | 13-35 | AATVIVCIAAVTLLVLLGGLAWW |
| Outside | 36-54 | LWAMDRATQWETLRPLIAT |
| Transmembrane helix | 55-77 | GFIIWGMALSLLVLGFMAFRLLI |
| Inside | 78-367 | KDKVKPSAAPVRQPTRPAGGEALYAPLKKHLHARYRLHWRRKVRLLLVTGDEAAIEQLVPGLRQQRWLEGQRTVLIYGGSLLSEPDSEQYAALRKLRHGRPLDGIVRVMPSSLTLTPQISESDLRGLEKISELLGYAAPVWLWKLCDSEWPQADRAEQAVGVSFPLRATEEDVARQLAQMLPTLREQGMHQIAADTRHDFLLRLGQQLIDGEIAQWRRQLAPWLTASRQRLALRGLMFSLPEPRTVDPYQEADALPASQPHLLTLPATWQGIVDDCRRLRGHHVGMAWER |
| Transmembrane helix | 368-390 | GLACGLLAIFGLWAAGLLLSFAL |
| Outside | 391-1141 | NYSQIASVAGKARDLVAHPSVSDYQLTALHALRNEAGRLVHDGQNGAPWYRRFGLDHHQQLLDAVLPWYGVANHRLIRDPANAALQQALSALVNSAPNSDQRAQLAKPGYDQLKAWLMMARPDKADGAFFAQTMKTVQPTRMGISTGLWQSLAPDLWAFYLSLLPERPEWKIIPDAQRVSQSRQVLLQQLGRRNAESTLYENMLKSVRRNFADVSLEDMTSGTDARRLFTTNEVVPGMFTRQAWEGGIQQAIDKAASSRREEIDWVLSDSRKTMSTDLSPEALKARLTRRYFTDFAGSWLNFLNSLRLNPATTIADVTDQLTLISGVRQSPLIALMNTLAWQGQAGQQREGLSDSLIKSAKDLVGGKDKPVIDQSAAGPQGPLDDTFGPLLQLMGKNTGSNVMSADSTLSLQTYLTRITRVRLRLQQVANASDPQEMMQTLAQTVFLGKSVDLTDTQQYGSLISASLGEEWSGFGNTLFVQPLTQAWETVLLPSAASLNDKWRRSVVANWHTAFDGRFPFAASKSDASLPMLAEFVRKDSGRIERFLTTELNGVLHKEGSQWVPDKVNSHGLVFNPAFLRAINQLSQLSDILFTDGSQGISFELQARPAPEVVETQLTIDGQKLRYFNQMADWQTFRWPGETYKPGTLLTWTTVNAGTRLFGDYSGTWGFIRWLEQGKRHPLDRSQWMMSFSAPDGRTLQWVLRSQLGSGPLALLALRGLTLPDQIFTVDAAESAQALTTGVGNSDMDEME |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9951 | - | - |
Protein sequence: 1142 a.a.
Nucleotide sequence: 3426 bp