Detailed information of component protein


Summary

Component ID T6CP005798
Component protein type TssB
T6SS ID (Type) T6SS00548 experimental (Type i2)
Strain Klebsiella pneumoniae subsp. pneumoniae HS11286
Replicon chromosome
Sequence Protein sequence (164 a.a.); Nucleotide sequence (492 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) KPHS_22970
Coordinate (Strand) 2326237..2326728 (+)
NCBI ID YP_005226597.1
RefSeq NC_016845
Uniprot ID A0A0H3GMB9_KLEPH
KEGG ID kpm:KPHS_22970
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.1e-51 7..157

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-163 MADTFQNEVPRARINLKLSLHTGGAQKKVELPLKLLTIGDFSHVKENRPLSEREKINVNKNNFNSVLSEFSPEVNLSVPNTLAGNGEEENVRLRFTDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEMSALAPK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9953 - -



  Protein sequence: 164 a.a.    

>T6CP005798 NC_016845:2326237-2326728 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssB]
MADTFQNEVPRARINLKLSLHTGGAQKKVELPLKLLTIGDFSHVKENRPLSEREKINVNKNNFNSVLSEFSPEVNLSVPN
TLAGNGEEENVRLRFTDIKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEAILKDPALSQELRDEMSAL
APK*

  Nucleotide sequence: 492 bp    

>T6CP005798 NC_016845:2326237-2326728 [Klebsiella pneumoniae subsp. pneumoniae HS11286] [TssB]
ATGGCTGATACGTTCCAGAATGAAGTCCCCAGGGCGCGCATTAATCTCAAATTATCTCTTCATACCGGCGGCGCGCAAAA
GAAGGTCGAACTGCCGCTCAAACTGCTTACCATTGGCGATTTTAGTCATGTTAAGGAAAACCGGCCTTTATCGGAAAGAG
AAAAAATCAACGTCAATAAAAATAATTTTAACAGCGTACTTTCGGAATTTAGCCCGGAAGTTAACCTCTCGGTGCCGAAT
ACGCTGGCCGGCAATGGCGAAGAGGAGAACGTCAGACTGCGTTTTACCGACATCAAAGATTTTGAACCGGAGCAGGTTGC
CCGGCAAATTCCGCAACTCCGCGCCATGCTGGCGATGCGTAATTTATTACGCGATCTCAAATCCAATCTGCTCGATAACG
CCACTTTCAGAAAAGAGCTTGAGGCAATCCTGAAAGATCCGGCGCTGTCCCAGGAATTACGCGACGAAATGAGTGCGCTT
GCCCCGAAATAA