Detailed information of component protein


Summary

Component ID T6CP005747
Component protein type TssC
T6SS ID (Type) T6SS00541 insolico (Type i1)
Strain Pseudomonas fluorescens F113
Replicon chromosome
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSF113_RS59975
Coordinate (Strand) 6723361..6724836 (-)
NCBI ID WP_014340910.1
RefSeq NC_016830
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.4e-129 65..364
VipB_2 PF18945.2 1.1e-44 378..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-491 MSTHAVQQQSQDNADYSILESIIAQTRLTPDDDAYDIAKRGVSAFIEELLKPQNSGEPVKKAMVDRMIAEIDAKLSRQVDEILHHPQFQALESAWRGLQLLVDRTNFRENIKIEMLNVSKDDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAVIANYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDARYFGLTVPRFLLRNPYDPQENPVKSFVYKETVANSHEHYLWGNTAYAFGTRLTDSFAKFRWCPNIVGPQSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGNGAEDKHAELNYKLGTQLPYMMIVNRLAHYLKVLQREQLGSWKERTDLERELNNWIRQYVADQENPSAEVRGRRPLRAAKIIVSDVEGEPGWYRVGLNVRPHFKYMGADFTLSLVGKLDKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9909 - -


  Protein sequence: 492 a.a.    

>T6CP005747 NC_016830:c6724836-6723361 [Pseudomonas fluorescens F113] [TssC]
MSTHAVQQQSQDNADYSILESIIAQTRLTPDDDAYDIAKRGVSAFIEELLKPQNSGEPVKKAMVDRMIAEIDAKLSRQVD
EILHHPQFQALESAWRGLQLLVDRTNFRENIKIEMLNVSKDDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAVIA
NYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDARYFGLTVP
RFLLRNPYDPQENPVKSFVYKETVANSHEHYLWGNTAYAFGTRLTDSFAKFRWCPNIVGPQSGGAVEDLPLHHFESMGEI
ETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGNGAEDKHAELNYKLGTQLPYMMIVNRLAHY
LKVLQREQLGSWKERTDLERELNNWIRQYVADQENPSAEVRGRRPLRAAKIIVSDVEGEPGWYRVGLNVRPHFKYMGADF
TLSLVGKLDKA*

  Nucleotide sequence: 1476 bp    

>T6CP005747 NC_016830:c6724836-6723361 [Pseudomonas fluorescens F113] [TssC]
ATGAGTACCCATGCCGTACAACAGCAAAGCCAGGACAACGCTGATTACAGCATTCTTGAGAGCATCATCGCCCAGACTCG
CCTGACCCCGGACGATGACGCCTACGACATTGCCAAGCGAGGCGTCTCTGCGTTCATCGAAGAGTTGCTCAAGCCGCAAA
ACAGCGGTGAGCCGGTCAAGAAGGCCATGGTCGACCGCATGATCGCCGAGATCGACGCCAAGCTCAGTCGCCAGGTGGAC
GAAATCCTCCATCACCCACAATTCCAGGCCCTGGAGTCGGCATGGCGCGGTTTGCAGTTGCTGGTGGACCGCACCAACTT
CCGCGAAAACATCAAGATAGAAATGCTCAACGTCTCCAAGGACGACTTGCTGGACGACTTCGAGGATTCGCCAGAAGTCA
TGCAGTCAGGCCTGTACAAACATATCTACACCGCTGAATACGGTCAGTTCGGTGGGCAGCCGGTGGGTGCGGTCATCGCC
AACTACTTCATGTCGCCAAGCTCGCCGGACGTGAAATTGATGCAGTACGTCTCCAGTGTCGCCTGCATGTCCCATGCACC
GTTCATCGCCGCGGCAGGTCCGAAATTCTTTGGCTTGGAAAGCTTTACTGGCCTGCCGGACCTCAAGGACCTGAAGGACC
ACTTCGAAGGTCCGCAATTCGCCAAGTGGCAGAGCTTTCGTCAATCGGAAGATGCTCGCTATTTTGGTCTGACCGTACCG
CGCTTCCTGTTGCGCAACCCCTACGATCCGCAAGAGAACCCGGTCAAGTCATTCGTCTACAAGGAAACCGTAGCCAACAG
CCACGAGCACTACCTGTGGGGCAACACGGCATACGCGTTCGGTACAAGGCTGACCGACAGCTTTGCCAAATTCCGCTGGT
GCCCGAACATCGTCGGCCCTCAAAGCGGTGGCGCGGTTGAAGACCTGCCGTTGCACCACTTCGAAAGCATGGGTGAGATC
GAAACCAAGATCCCGACCGAAGTGCTGGTGTCCGACCGACGCGAGTACGAATTGGCCGAGGAAGGCTTCATCTCCCTGAC
CATGCGCAAAGGCAGTGACAACGCCGCGTTCTTCTCGGCCAGTTCCGTGCAGAAGCCGAAGTTCTTTGGTAACGGCGCCG
AGGACAAGCATGCCGAGCTGAACTACAAGCTTGGCACTCAGTTGCCCTACATGATGATTGTCAATCGACTGGCTCACTAC
TTGAAGGTTCTGCAGCGCGAGCAATTGGGGTCATGGAAGGAGCGCACGGACCTGGAGCGTGAACTCAACAACTGGATTCG
CCAATACGTGGCCGACCAGGAGAACCCGAGTGCCGAAGTTCGCGGCCGCCGTCCGCTGCGCGCAGCGAAGATCATTGTCA
GCGACGTTGAAGGTGAGCCGGGTTGGTATCGCGTAGGCCTGAACGTACGGCCTCACTTCAAATACATGGGGGCCGATTTC
ACGCTGTCGTTGGTTGGCAAGCTGGACAAGGCGTAG