Detailed information of component protein
Summary
External database links
Locus tag (Gene) | PSF113_RS59975 |
Coordinate (Strand) | 6723361..6724836 (-) |
NCBI ID | WP_014340910.1 |
RefSeq | NC_016830 |
Uniprot ID | - |
KEGG ID | - |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 6.4e-129 | 65..364 |
VipB_2 | PF18945.2 | 1.1e-44 | 378..488 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-491 | MSTHAVQQQSQDNADYSILESIIAQTRLTPDDDAYDIAKRGVSAFIEELLKPQNSGEPVKKAMVDRMIAEIDAKLSRQVDEILHHPQFQALESAWRGLQLLVDRTNFRENIKIEMLNVSKDDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAVIANYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDARYFGLTVPRFLLRNPYDPQENPVKSFVYKETVANSHEHYLWGNTAYAFGTRLTDSFAKFRWCPNIVGPQSGGAVEDLPLHHFESMGEIETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGNGAEDKHAELNYKLGTQLPYMMIVNRLAHYLKVLQREQLGSWKERTDLERELNNWIRQYVADQENPSAEVRGRRPLRAAKIIVSDVEGEPGWYRVGLNVRPHFKYMGADFTLSLVGKLDKA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9909 | - | - |
Protein sequence: 492 a.a.
>T6CP005747 NC_016830:c6724836-6723361 [Pseudomonas fluorescens F113] [TssC]
MSTHAVQQQSQDNADYSILESIIAQTRLTPDDDAYDIAKRGVSAFIEELLKPQNSGEPVKKAMVDRMIAEIDAKLSRQVD
EILHHPQFQALESAWRGLQLLVDRTNFRENIKIEMLNVSKDDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAVIA
NYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDARYFGLTVP
RFLLRNPYDPQENPVKSFVYKETVANSHEHYLWGNTAYAFGTRLTDSFAKFRWCPNIVGPQSGGAVEDLPLHHFESMGEI
ETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGNGAEDKHAELNYKLGTQLPYMMIVNRLAHY
LKVLQREQLGSWKERTDLERELNNWIRQYVADQENPSAEVRGRRPLRAAKIIVSDVEGEPGWYRVGLNVRPHFKYMGADF
TLSLVGKLDKA*
MSTHAVQQQSQDNADYSILESIIAQTRLTPDDDAYDIAKRGVSAFIEELLKPQNSGEPVKKAMVDRMIAEIDAKLSRQVD
EILHHPQFQALESAWRGLQLLVDRTNFRENIKIEMLNVSKDDLLDDFEDSPEVMQSGLYKHIYTAEYGQFGGQPVGAVIA
NYFMSPSSPDVKLMQYVSSVACMSHAPFIAAAGPKFFGLESFTGLPDLKDLKDHFEGPQFAKWQSFRQSEDARYFGLTVP
RFLLRNPYDPQENPVKSFVYKETVANSHEHYLWGNTAYAFGTRLTDSFAKFRWCPNIVGPQSGGAVEDLPLHHFESMGEI
ETKIPTEVLVSDRREYELAEEGFISLTMRKGSDNAAFFSASSVQKPKFFGNGAEDKHAELNYKLGTQLPYMMIVNRLAHY
LKVLQREQLGSWKERTDLERELNNWIRQYVADQENPSAEVRGRRPLRAAKIIVSDVEGEPGWYRVGLNVRPHFKYMGADF
TLSLVGKLDKA*
Nucleotide sequence: 1476 bp
>T6CP005747 NC_016830:c6724836-6723361 [Pseudomonas fluorescens F113] [TssC]
ATGAGTACCCATGCCGTACAACAGCAAAGCCAGGACAACGCTGATTACAGCATTCTTGAGAGCATCATCGCCCAGACTCG
CCTGACCCCGGACGATGACGCCTACGACATTGCCAAGCGAGGCGTCTCTGCGTTCATCGAAGAGTTGCTCAAGCCGCAAA
ACAGCGGTGAGCCGGTCAAGAAGGCCATGGTCGACCGCATGATCGCCGAGATCGACGCCAAGCTCAGTCGCCAGGTGGAC
GAAATCCTCCATCACCCACAATTCCAGGCCCTGGAGTCGGCATGGCGCGGTTTGCAGTTGCTGGTGGACCGCACCAACTT
CCGCGAAAACATCAAGATAGAAATGCTCAACGTCTCCAAGGACGACTTGCTGGACGACTTCGAGGATTCGCCAGAAGTCA
TGCAGTCAGGCCTGTACAAACATATCTACACCGCTGAATACGGTCAGTTCGGTGGGCAGCCGGTGGGTGCGGTCATCGCC
AACTACTTCATGTCGCCAAGCTCGCCGGACGTGAAATTGATGCAGTACGTCTCCAGTGTCGCCTGCATGTCCCATGCACC
GTTCATCGCCGCGGCAGGTCCGAAATTCTTTGGCTTGGAAAGCTTTACTGGCCTGCCGGACCTCAAGGACCTGAAGGACC
ACTTCGAAGGTCCGCAATTCGCCAAGTGGCAGAGCTTTCGTCAATCGGAAGATGCTCGCTATTTTGGTCTGACCGTACCG
CGCTTCCTGTTGCGCAACCCCTACGATCCGCAAGAGAACCCGGTCAAGTCATTCGTCTACAAGGAAACCGTAGCCAACAG
CCACGAGCACTACCTGTGGGGCAACACGGCATACGCGTTCGGTACAAGGCTGACCGACAGCTTTGCCAAATTCCGCTGGT
GCCCGAACATCGTCGGCCCTCAAAGCGGTGGCGCGGTTGAAGACCTGCCGTTGCACCACTTCGAAAGCATGGGTGAGATC
GAAACCAAGATCCCGACCGAAGTGCTGGTGTCCGACCGACGCGAGTACGAATTGGCCGAGGAAGGCTTCATCTCCCTGAC
CATGCGCAAAGGCAGTGACAACGCCGCGTTCTTCTCGGCCAGTTCCGTGCAGAAGCCGAAGTTCTTTGGTAACGGCGCCG
AGGACAAGCATGCCGAGCTGAACTACAAGCTTGGCACTCAGTTGCCCTACATGATGATTGTCAATCGACTGGCTCACTAC
TTGAAGGTTCTGCAGCGCGAGCAATTGGGGTCATGGAAGGAGCGCACGGACCTGGAGCGTGAACTCAACAACTGGATTCG
CCAATACGTGGCCGACCAGGAGAACCCGAGTGCCGAAGTTCGCGGCCGCCGTCCGCTGCGCGCAGCGAAGATCATTGTCA
GCGACGTTGAAGGTGAGCCGGGTTGGTATCGCGTAGGCCTGAACGTACGGCCTCACTTCAAATACATGGGGGCCGATTTC
ACGCTGTCGTTGGTTGGCAAGCTGGACAAGGCGTAG
ATGAGTACCCATGCCGTACAACAGCAAAGCCAGGACAACGCTGATTACAGCATTCTTGAGAGCATCATCGCCCAGACTCG
CCTGACCCCGGACGATGACGCCTACGACATTGCCAAGCGAGGCGTCTCTGCGTTCATCGAAGAGTTGCTCAAGCCGCAAA
ACAGCGGTGAGCCGGTCAAGAAGGCCATGGTCGACCGCATGATCGCCGAGATCGACGCCAAGCTCAGTCGCCAGGTGGAC
GAAATCCTCCATCACCCACAATTCCAGGCCCTGGAGTCGGCATGGCGCGGTTTGCAGTTGCTGGTGGACCGCACCAACTT
CCGCGAAAACATCAAGATAGAAATGCTCAACGTCTCCAAGGACGACTTGCTGGACGACTTCGAGGATTCGCCAGAAGTCA
TGCAGTCAGGCCTGTACAAACATATCTACACCGCTGAATACGGTCAGTTCGGTGGGCAGCCGGTGGGTGCGGTCATCGCC
AACTACTTCATGTCGCCAAGCTCGCCGGACGTGAAATTGATGCAGTACGTCTCCAGTGTCGCCTGCATGTCCCATGCACC
GTTCATCGCCGCGGCAGGTCCGAAATTCTTTGGCTTGGAAAGCTTTACTGGCCTGCCGGACCTCAAGGACCTGAAGGACC
ACTTCGAAGGTCCGCAATTCGCCAAGTGGCAGAGCTTTCGTCAATCGGAAGATGCTCGCTATTTTGGTCTGACCGTACCG
CGCTTCCTGTTGCGCAACCCCTACGATCCGCAAGAGAACCCGGTCAAGTCATTCGTCTACAAGGAAACCGTAGCCAACAG
CCACGAGCACTACCTGTGGGGCAACACGGCATACGCGTTCGGTACAAGGCTGACCGACAGCTTTGCCAAATTCCGCTGGT
GCCCGAACATCGTCGGCCCTCAAAGCGGTGGCGCGGTTGAAGACCTGCCGTTGCACCACTTCGAAAGCATGGGTGAGATC
GAAACCAAGATCCCGACCGAAGTGCTGGTGTCCGACCGACGCGAGTACGAATTGGCCGAGGAAGGCTTCATCTCCCTGAC
CATGCGCAAAGGCAGTGACAACGCCGCGTTCTTCTCGGCCAGTTCCGTGCAGAAGCCGAAGTTCTTTGGTAACGGCGCCG
AGGACAAGCATGCCGAGCTGAACTACAAGCTTGGCACTCAGTTGCCCTACATGATGATTGTCAATCGACTGGCTCACTAC
TTGAAGGTTCTGCAGCGCGAGCAATTGGGGTCATGGAAGGAGCGCACGGACCTGGAGCGTGAACTCAACAACTGGATTCG
CCAATACGTGGCCGACCAGGAGAACCCGAGTGCCGAAGTTCGCGGCCGCCGTCCGCTGCGCGCAGCGAAGATCATTGTCA
GCGACGTTGAAGGTGAGCCGGGTTGGTATCGCGTAGGCCTGAACGTACGGCCTCACTTCAAATACATGGGGGCCGATTTC
ACGCTGTCGTTGGTTGGCAAGCTGGACAAGGCGTAG