Detailed information of component protein


Summary

Component ID T6CP005744
Component protein type TssH
T6SS ID (Type) T6SS00541 insolico (Type i1)
Strain Pseudomonas fluorescens F113
Replicon chromosome
Sequence Protein sequence (862 a.a.); Nucleotide sequence (2586 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) PSF113_RS59955
Coordinate (Strand) 6717583..6720168 (-)
NCBI ID WP_014340906.1
RefSeq NC_016830
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 8.7e-40 595..758
AAA_lid_9 PF17871.3 1.1e-28 348..446
AAA PF00004.31 8.1e-09 208..339
ClpB_D2-small PF10431.11 1.3e-05 770..837
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-861 MINVDLQQLIQALDAETRSDLSRSAEQCVARGADKVLVEDLMLGLLERPQGLLARALQDAQVSAGELSAALQPRMGHSASRNPVFAPELVQWLQDALLVANLELGCSQVGQAALILALLRNPLRYAGSAYQALLTRLNVDRLKDFALSQQTHPVADHSAKPDDSLLARFTHDLTRQAREGQLDPVLCRDGEVRQMIDILVRRRKNNPIVVGEAGVGKTAIVEGLALRIAAAEVPSVLEGVELLSLDMGLLQAGASIKGEFERRLKGVIDEVKASPKSIILFIDEAHTLIGAGGNAGGADAANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLARVYENSHGIYLRDDAVVAAAQLSARYLAGRQLPDKAVDVLDTACARVRISLAAAPHSLERLRGELAEGERQRQALRRDAQAGLSIDLQALEALEVRLEAIEDERRTLEIHWTEQRILAERLLALRQQLAKVRDGAVDQPLSVEALEAALHETHGTLVAAQVQERLVSFEVCPRLVAEVISAWTGVPLAQLAREHSLKVASFATDLRARIRGQEPAVRALDRAMRAAAAGLNKPDAPVGVFLLVGPSGVGKTETAHALADLLYGGDRFITTLNMAEFQEKHTVSRLIGAPPGYVGFGEGGMLTEAVRQKPYSVVLLDEVEKTDPDVLNLFYQIFDKGLANDGEGREIDFRNTLILMTSNLGSERINELCENGTKPSAECLEESIRPILSQHFKPALLARMCVVPYYPLNGPVLRELVEVKLDHLGERLHRRQLGFSYCGHLVNHLVERCSRNDRGARLIDQLLDLHLMPLVADRLLAAMAGGEQLRHVHAVLNGDASLACEFS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9933 - -


  Protein sequence: 862 a.a.    

>T6CP005744 NC_016830:c6720168-6717583 [Pseudomonas fluorescens F113] [TssH]
MINVDLQQLIQALDAETRSDLSRSAEQCVARGADKVLVEDLMLGLLERPQGLLARALQDAQVSAGELSAALQPRMGHSAS
RNPVFAPELVQWLQDALLVANLELGCSQVGQAALILALLRNPLRYAGSAYQALLTRLNVDRLKDFALSQQTHPVADHSAK
PDDSLLARFTHDLTRQAREGQLDPVLCRDGEVRQMIDILVRRRKNNPIVVGEAGVGKTAIVEGLALRIAAAEVPSVLEGV
ELLSLDMGLLQAGASIKGEFERRLKGVIDEVKASPKSIILFIDEAHTLIGAGGNAGGADAANLLKPALARGELRTIAATT
WAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLARVYENSHGIYLRDDAVVAAAQLSARYLAGRQLPDKAVDVLD
TACARVRISLAAAPHSLERLRGELAEGERQRQALRRDAQAGLSIDLQALEALEVRLEAIEDERRTLEIHWTEQRILAERL
LALRQQLAKVRDGAVDQPLSVEALEAALHETHGTLVAAQVQERLVSFEVCPRLVAEVISAWTGVPLAQLAREHSLKVASF
ATDLRARIRGQEPAVRALDRAMRAAAAGLNKPDAPVGVFLLVGPSGVGKTETAHALADLLYGGDRFITTLNMAEFQEKHT
VSRLIGAPPGYVGFGEGGMLTEAVRQKPYSVVLLDEVEKTDPDVLNLFYQIFDKGLANDGEGREIDFRNTLILMTSNLGS
ERINELCENGTKPSAECLEESIRPILSQHFKPALLARMCVVPYYPLNGPVLRELVEVKLDHLGERLHRRQLGFSYCGHLV
NHLVERCSRNDRGARLIDQLLDLHLMPLVADRLLAAMAGGEQLRHVHAVLNGDASLACEFS*

  Nucleotide sequence: 2586 bp    

>T6CP005744 NC_016830:c6720168-6717583 [Pseudomonas fluorescens F113] [TssH]
ATGATCAACGTAGACCTTCAGCAACTGATCCAGGCGTTGGACGCCGAAACCAGAAGCGATCTGTCGCGCTCGGCCGAGCA
ATGCGTCGCCCGTGGGGCAGACAAAGTCCTGGTGGAAGACTTGATGCTGGGCTTGCTGGAACGTCCGCAGGGGCTGCTCG
CGCGAGCCTTGCAAGATGCCCAGGTAAGCGCAGGTGAACTGAGCGCTGCGCTGCAACCACGGATGGGGCACAGCGCTTCG
CGCAATCCGGTATTCGCCCCGGAGCTGGTGCAATGGTTGCAGGATGCACTGCTGGTAGCCAATCTCGAGCTGGGCTGCAG
CCAGGTCGGACAAGCCGCGTTGATCCTGGCGTTGCTGCGCAACCCGCTTCGCTATGCAGGGAGTGCTTACCAGGCGCTGC
TCACCCGACTGAACGTCGATCGGTTGAAAGATTTCGCCTTGTCGCAACAGACCCACCCGGTAGCCGATCACTCCGCCAAG
CCGGACGACTCCCTGCTGGCGCGCTTCACCCATGACCTGACCCGGCAGGCTCGTGAAGGTCAACTCGACCCGGTGCTTTG
TCGCGACGGTGAAGTCAGGCAGATGATCGATATCCTCGTTCGTCGCCGCAAAAATAACCCAATCGTGGTCGGTGAAGCAG
GGGTGGGCAAGACCGCCATCGTCGAGGGGCTGGCGTTGCGCATCGCCGCCGCAGAAGTACCGTCAGTGCTCGAAGGCGTC
GAGCTGCTTTCGCTGGATATGGGGCTCCTGCAGGCCGGCGCCAGCATAAAAGGTGAATTCGAACGTCGTCTCAAAGGGGT
GATCGACGAGGTCAAGGCTTCGCCAAAATCCATCATCCTGTTCATCGATGAGGCTCACACCTTGATTGGCGCGGGTGGCA
ACGCCGGGGGCGCCGATGCGGCCAACCTGCTCAAGCCGGCCTTGGCCCGGGGTGAGCTGCGTACTATCGCGGCCACCACC
TGGGCCGAGTACAAAAAATATTTTGAGAAAGACCCGGCCCTGGCCCGTCGTTTCCAACCGGTGCAATTGCACGAGCCGAC
CGTCAGTGAAGCAGTGACCATCCTGCGCGGCCTGGCCCGGGTCTACGAGAACAGTCACGGCATTTACCTGCGGGATGATG
CGGTGGTCGCGGCGGCGCAATTGTCGGCCCGCTACCTGGCTGGTCGTCAGTTGCCAGACAAGGCTGTGGATGTGTTGGAC
ACTGCCTGCGCCCGCGTGCGCATCAGCCTGGCCGCTGCGCCGCATAGCCTGGAGCGATTGCGCGGCGAGTTGGCTGAAGG
CGAGCGCCAGCGCCAGGCGCTACGTCGTGATGCGCAGGCCGGCCTATCAATTGATCTTCAGGCGCTGGAAGCGCTGGAGG
TACGCCTGGAGGCCATCGAAGACGAGCGCCGAACGCTGGAGATCCACTGGACCGAGCAACGCATTCTTGCGGAGCGCCTG
TTGGCGCTTCGCCAGCAATTGGCCAAGGTACGGGACGGTGCGGTGGATCAACCCCTCAGCGTCGAAGCCTTGGAAGCGGC
GTTGCATGAAACACACGGCACGTTGGTGGCTGCGCAAGTCCAAGAGCGCCTGGTCAGCTTCGAAGTTTGCCCGCGACTGG
TAGCCGAAGTCATCAGTGCCTGGACCGGTGTGCCGCTGGCACAACTGGCGCGGGAGCACAGTTTGAAAGTCGCCAGTTTC
GCGACGGACCTGCGTGCTCGTATTCGTGGTCAGGAGCCGGCTGTGCGGGCGCTTGATCGCGCGATGCGTGCCGCCGCCGC
AGGCCTGAACAAACCCGACGCTCCGGTGGGCGTGTTTCTGTTGGTAGGGCCCAGTGGCGTCGGCAAGACCGAGACGGCGC
ATGCCCTGGCCGACCTGCTCTACGGCGGTGATCGTTTTATCACCACGCTCAACATGGCCGAATTCCAGGAGAAACATACG
GTTTCCCGGCTGATTGGCGCGCCGCCGGGCTACGTCGGTTTTGGCGAAGGCGGCATGCTCACCGAAGCCGTGCGGCAAAA
GCCCTATTCAGTGGTGCTGCTCGATGAGGTCGAAAAAACCGACCCGGATGTGTTGAATCTGTTCTACCAGATCTTCGACA
AGGGCTTGGCCAACGACGGAGAAGGGCGGGAGATTGATTTTCGCAACACCCTGATCCTGATGACGTCGAACCTGGGCAGC
GAACGCATCAACGAGTTGTGCGAAAACGGTACAAAACCAAGTGCCGAATGCCTTGAAGAGTCCATTCGCCCAATACTCAG
TCAACATTTCAAACCCGCGCTGTTGGCGCGCATGTGCGTGGTGCCGTACTACCCGCTCAACGGGCCGGTGTTACGTGAAC
TGGTGGAAGTCAAACTCGACCACCTGGGCGAGCGGCTGCACCGTCGTCAATTGGGTTTCAGTTATTGCGGGCACCTTGTG
AACCACCTGGTCGAGCGTTGCAGTCGTAATGATCGTGGCGCACGACTGATTGACCAACTGCTTGACCTGCACCTGATGCC
GCTGGTTGCCGACCGGTTGCTCGCCGCCATGGCCGGTGGCGAACAGCTACGGCACGTACACGCCGTGCTCAACGGCGACG
CCAGTCTCGCGTGTGAGTTCTCCTGA