Detailed information of component protein
Summary
| Component ID | T6CP005683 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00535  (Type i3) |
| Strain | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Replicon | chromosome |
| Sequence | Protein sequence (179 a.a.); Nucleotide sequence (537 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SL1344_RS01420 |
| Coordinate (Strand) | 319207..319743 (+) |
| NCBI ID | 446929850 |
| RefSeq | NC_016810 |
| Uniprot ID | A0A0H3NHR2_SALTS, A0A0W3M9A9_SALER, A0A2T9Q8X2_SALET, A0A2T8QQ39_SALET, A0A0F6AX82_SALT1, A0A0D6HFG4_SALTM, E8XIU5_SALT4, Q8ZRL4_SALTY |
| KEGG ID | seni:CY43_01400, seo:STM14_0328, sey:SL1344_0275, stm:STM0280, seb:STM474_0292 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 6.3e-39 | 39..159 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-178 | VNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSVKASDKVNPDNQKKAAPIEIRVYELKNDAAFTTADYWSLHDNDKSVLTDDLVRRDSFILRPGEEKKLRRPLNAQTTAIGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKVQLEAELEQSAIVITERDK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| LIPO(Sec/SPII) | 0.9989 | pos: 25-26. LSG-CG. | VNEWRNPTRWLCAVAMPFALLLLSG |
Protein sequence: 179 a.a.
>T6CP005683 NC_016810:319207-319743 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssJ]
VNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSVKASDKVNPDNQKKAAPIEIRVYELKNDAAFTTADYW
SLHDNDKSVLTDDLVRRDSFILRPGEEKKLRRPLNAQTTAIGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKV
QLEAELEQSAIVITERDK*
VNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSVKASDKVNPDNQKKAAPIEIRVYELKNDAAFTTADYW
SLHDNDKSVLTDDLVRRDSFILRPGEEKKLRRPLNAQTTAIGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKV
QLEAELEQSAIVITERDK*
Nucleotide sequence: 537 bp
>T6CP005683 NC_016810:319207-319743 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssJ]
GTGAATGAATGGCGTAACCCCACTCGGTGGTTATGTGCGGTAGCTATGCCTTTTGCACTGCTCCTGCTTTCCGGATGCGG
CAGTAGCGATGCGTTACCTGACCTCGAATCACAGCGACTCGACCTGAGCGTGAAAGCCTCCGATAAGGTGAATCCTGACA
ATCAGAAGAAGGCCGCGCCCATTGAGATACGTGTTTATGAACTGAAAAATGACGCCGCTTTCACGACAGCTGATTACTGG
TCGCTCCATGACAACGACAAATCCGTCCTTACCGACGATTTAGTGCGTCGCGACAGCTTTATTTTGCGTCCCGGCGAAGA
GAAAAAACTGCGTCGCCCGCTGAATGCGCAGACCACGGCAATCGGCGTACTGGCCGGATACCGTAACCTGGCCAAATCGG
TCTGGCGGGTAACCTACAAAATCCCGGAAGCCCCGGAAAAAGCCTGGTACAGCAGCTTCATATCGGGGAAAGGAAAAGTG
CAGTTGGAGGCGGAACTGGAACAAAGCGCCATTGTAATTACGGAACGGGATAAATGA
GTGAATGAATGGCGTAACCCCACTCGGTGGTTATGTGCGGTAGCTATGCCTTTTGCACTGCTCCTGCTTTCCGGATGCGG
CAGTAGCGATGCGTTACCTGACCTCGAATCACAGCGACTCGACCTGAGCGTGAAAGCCTCCGATAAGGTGAATCCTGACA
ATCAGAAGAAGGCCGCGCCCATTGAGATACGTGTTTATGAACTGAAAAATGACGCCGCTTTCACGACAGCTGATTACTGG
TCGCTCCATGACAACGACAAATCCGTCCTTACCGACGATTTAGTGCGTCGCGACAGCTTTATTTTGCGTCCCGGCGAAGA
GAAAAAACTGCGTCGCCCGCTGAATGCGCAGACCACGGCAATCGGCGTACTGGCCGGATACCGTAACCTGGCCAAATCGG
TCTGGCGGGTAACCTACAAAATCCCGGAAGCCCCGGAAAAAGCCTGGTACAGCAGCTTCATATCGGGGAAAGGAAAAGTG
CAGTTGGAGGCGGAACTGGAACAAAGCGCCATTGTAATTACGGAACGGGATAAATGA