Detailed information of component protein


Summary

Component ID T6CP005682
Component protein type TssD
T6SS ID (Type) T6SS00535 experimental (Type i3)
Strain Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344
Replicon chromosome
Sequence Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) SL1344_RS01415
Coordinate (Strand) 318655..319140 (+)
NCBI ID 446041588
RefSeq NC_016810
Uniprot ID A0A0R9MBY7_SALNE, A0A0H3N8E4_SALTS, A0A0M0PMZ4_SALER, A0A2T9Q8Z8_SALET, A0A2T8QQ62_SALET, A0A0H3BNU5_SALNS, A0A2R4DDA1_SALET, A0A0F6AX81_SALT1, A0A265B9N7_SALET, H9L4J8_SALTM, E8XIU4_SALT4, Q93IS3_SALTY
KEGG ID see:SNSL254_A0305, seb:STM474_0291, sey:SL1344_0274, stm:STM0279, seni:CY43_01395, seo:STM14_0327
PDB ID 5XEU

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 2e-38 6..136

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-161 MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIPQAILVMRKAGGNPLEYLKYTFTDLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9848 - -



  Protein sequence: 162 a.a.    

>T6CP005682 NC_016810:318655-319140 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssD]
MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*

  Nucleotide sequence: 486 bp    

>T6CP005682 NC_016810:318655-319140 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssD]
ATGTCTTATGACATTTTTCTGAAAATTGACGGCATTGACGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGTCTCGGTTCCGGTAAGGTCTCCGTCA
CTAATCTTTCATTTGAACATTACATCGATCGCGCCAGCCCGAACCTGTTCAAATACTGCTCTTCCGGTAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTACACTTTCACAGATCTGATTATTGC
AATGGTATCGCCCAGCGGAAGCCAGGGAGGGGAAATTGCGTCTCGCGAATCAATTGAACTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGTGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA