Detailed information of component protein
Summary
| Component ID | T6CP005681 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00535  (Type i3) |
| Strain | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Replicon | chromosome |
| Sequence | Protein sequence (162 a.a.); Nucleotide sequence (486 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SL1344_RS01400 |
| Coordinate (Strand) | 316869..317354 (+) |
| NCBI ID | 446234947 |
| RefSeq | NC_016810 |
| Uniprot ID | A0A2T8L445_SALET, A0A0H3N9H6_SALTS, F5CQ80_SALER, A0A2T9Q939_SALET, A0A2T8QQ42_SALET, A0A0H3BMP9_SALNS, A0A2R4DDD4_SALET, A0A0F6AX78_SALT1, A0A2T8XXQ6_SALIN, A0A265BA06_SALET, A0A1S0ZM11_SALET, Q93IS5_SALTI, H9L4J2_SALTM, E8XIU1_SALT4, Q7CR58_SALTY |
| KEGG ID | seo:STM14_0324, stm:STM0276, stt:t2584, seni:CY43_01380, sty:STY0302, see:SNSL254_A0302, sey:SL1344_0271, seb:STM474_0288 |
| PDB ID | 5XHH |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 6.9e-38 | 6..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-161 | MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9900 | - | - |
Protein sequence: 162 a.a.
>T6CP005681 NC_016810:316869-317354 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssD]
MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*
MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I*
Nucleotide sequence: 486 bp
>T6CP005681 NC_016810:316869-317354 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssD]
ATGGCTTATGACATTTTTTTGAAAATTGACGGCATTGATGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGCCTCGGCTCCGGTAAGGTCTCCGTCA
CCAACCTGGATTTTGATCACTATATCGACCGCGCCAGCCCGAACCTGTTCAAATACTGCGCCTCCGGCAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTATACCTTCACCGACCTGATTGTCGC
CGTGGTTTCCCCGAGCGGCAGCCACGATGGTGAAATCGCCTCCCGTGAAACGGTGGAGCTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGCGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA
ATGGCTTATGACATTTTTTTGAAAATTGACGGCATTGATGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATTCATCAGGAATCCACCATGCACGCCGGTAGCGGCCTCGGCTCCGGTAAGGTCTCCGTCA
CCAACCTGGATTTTGATCACTATATCGACCGCGCCAGCCCGAACCTGTTCAAATACTGCGCCTCCGGCAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTATACCTTCACCGACCTGATTGTCGC
CGTGGTTTCCCCGAGCGGCAGCCACGATGGTGAAATCGCCTCCCGTGAAACGGTGGAGCTCTCCTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGCGGCAGCGGCGGCACCATCACCGCAGGCTACGACTTCAAGGCCAACAAAGAA
ATTTAA