Detailed information of component protein
Summary
| Component ID | T6CP005679 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00535  (Type i3) |
| Strain | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Replicon | chromosome |
| Sequence | Protein sequence (181 a.a.); Nucleotide sequence (543 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SL1344_RS01385 |
| Coordinate (Strand) | 313924..314466 (+) |
| NCBI ID | WP_000996817.1 |
| RefSeq | NC_016810 |
| Uniprot ID | A0A3Z2NTP6_SALEN, A0A606UHN8_SALTM, A0A7U1KS07_SALET, A0A0H3ND31_SALTS, A0A3Z3GFK8_SALET, A0A4P9T0F1_SALET, A0A5I4KMM1_SALET, A0A3U8PAI7_SALBE, A0A0M0PTI9_SALER, A0A5W1RH43_SALET, A0A2T8QKQ0_SALET, A0A3T2WCQ2_SALET, A0A6C6ZZQ9_SALDC, A0A315GLS2_SALET, A0A6C7I6R3_SALTD, A0A6Y0YUC8_SALET, A0A0F6AX74_SALT1, A0A3U7NHJ4_SALET, A0A636DDZ3_SALET, A0A5R1YIV3_SALIN, A0A3V6BQG0_SALTH, A0A4U1FYX3_SALET, H9L4I8_SALTM, E8XIT7_SALT4, A0A5H9CY08_SALDU, A0A3Z6P2N8_SALTU, Q93IS8_SALTY |
| KEGG ID | seb:STM474_0284, sev:STMMW_02731, seni:CY43_01370, sey:SL1344_0267, sed:SeD_A0296, stm:STM0273, seo:STM14_0320, sej:STMUK_0275 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 5.2e-57 | 12..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-180 | MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPRVAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLANAPKSAATQQDVSADNESAE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9970 | - | - |
Protein sequence: 181 a.a.
>T6CP005679 NC_016810:313924-314466 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssB]
MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPR
VAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA
NAPKSAATQQDVSADNESAE*
MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPR
VAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA
NAPKSAATQQDVSADNESAE*
Nucleotide sequence: 543 bp
>T6CP005679 NC_016810:313924-314466 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssB]
ATGGCTATCAACAATAGCGCGCAGAAATTCATCGCGCGCAACCGCGCGCCGCGCGTGCAGATTGAATATGACGTAGAGAT
TTACGGTTCCGAGAAAAAAATCGAGCTGCCGTTCGTGATGGCGGTGCTGGCCGATCTGGCCGGGAAACCGCGTGAAGAAC
TGCCGCCGGTGACGGATCGCAAATTCCTCGATATTGATATTGATAACTTCAATGAGCGCATGAAAGCCATTGCGCCGCGC
GTGGCGTTCGCTGTGCCGAATACGCTGACGGGTGAAGGTCAGTTGATGGTCGATATCACGCTGGAAAATATGGACGACTT
TTCGCCGGCACAGATTGCCCGCAAGGTGGACGCCCTGAACCAGTTACTGGAAGCCCGCACTCAACTGGCGAACCTCCAGA
CCTACATGGATGGCAAGGCGGGGGCGGAAAATCTGGTCAATAAACTGTTGCAGGACCCGACTCTGCTGAAAACGCTGGCG
AATGCGCCGAAATCGGCCGCTACCCAGCAAGATGTGTCAGCGGATAATGAATCAGCGGAATAA
ATGGCTATCAACAATAGCGCGCAGAAATTCATCGCGCGCAACCGCGCGCCGCGCGTGCAGATTGAATATGACGTAGAGAT
TTACGGTTCCGAGAAAAAAATCGAGCTGCCGTTCGTGATGGCGGTGCTGGCCGATCTGGCCGGGAAACCGCGTGAAGAAC
TGCCGCCGGTGACGGATCGCAAATTCCTCGATATTGATATTGATAACTTCAATGAGCGCATGAAAGCCATTGCGCCGCGC
GTGGCGTTCGCTGTGCCGAATACGCTGACGGGTGAAGGTCAGTTGATGGTCGATATCACGCTGGAAAATATGGACGACTT
TTCGCCGGCACAGATTGCCCGCAAGGTGGACGCCCTGAACCAGTTACTGGAAGCCCGCACTCAACTGGCGAACCTCCAGA
CCTACATGGATGGCAAGGCGGGGGCGGAAAATCTGGTCAATAAACTGTTGCAGGACCCGACTCTGCTGAAAACGCTGGCG
AATGCGCCGAAATCGGCCGCTACCCAGCAAGATGTGTCAGCGGATAATGAATCAGCGGAATAA