Detailed information of component protein
Summary
| Component ID | T6CP005677 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00535  (Type i3) |
| Strain | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Replicon | chromosome |
| Sequence | Protein sequence (165 a.a.); Nucleotide sequence (495 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | SL1344_RS01360 |
| Coordinate (Strand) | 308613..309107 (-) |
| NCBI ID | 446030152 |
| RefSeq | NC_016810 |
| Uniprot ID | A0A0R9N6C9_SALNE, V7ILA6_SALET, M7S6R3_SALDU, A0A2C9P3F7_SALET, A0A2T8L4B1_SALET, A0A0H3N8D2_SALTS, A0A0M0PMY4_SALER, Q57SZ1_SALCH, A0A2T9Q906_SALET, A0A2T8QSG5_SALET, A0A0H3BTC0_SALNS, C0Q6N7_SALPC, A0A2R4DDC9_SALET, A0A0F6AX70_SALT1, A0A2T8XXP9_SALIN, E8XIT3_SALT4, A0A2T8WWL4_SALET, Q93IT2_SALTY |
| KEGG ID | seb:STM474_0280, sey:SL1344_0263, sei:SPC_0278, stm:STM0269, sec:SCH_0264, see:SNSL254_A0294, seo:STM14_0316 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.5e-22 | 39..143 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-164 | MSTSRFTPANHLLPTLFDRLCDNAPYQKIDRDISVTPVQLKEIIRRDLSFLLNTISHEGDIDARRYPQAAASVLNYGLPPLAGSFMYEHKWDDISEAIRRAIIRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSRITFF |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9903 | - | - |
Protein sequence: 165 a.a.
>T6CP005677 NC_016810:c309107-308613 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssE]
MSTSRFTPANHLLPTLFDRLCDNAPYQKIDRDISVTPVQLKEIIRRDLSFLLNTISHEGDIDARRYPQAAASVLNYGLPP
LAGSFMYEHKWDDISEAIRRAIIRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSR
ITFF*
MSTSRFTPANHLLPTLFDRLCDNAPYQKIDRDISVTPVQLKEIIRRDLSFLLNTISHEGDIDARRYPQAAASVLNYGLPP
LAGSFMYEHKWDDISEAIRRAIIRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSR
ITFF*
Nucleotide sequence: 495 bp
>T6CP005677 NC_016810:c309107-308613 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] [TssE]
ATGAGCACGTCTCGTTTTACACCCGCTAACCACCTGCTGCCCACGCTGTTTGATCGGCTGTGTGACAATGCTCCGTATCA
GAAAATTGACCGGGATATCAGCGTCACGCCGGTACAACTGAAGGAGATCATTCGCCGGGATCTCTCCTTTTTGCTCAATA
CCATTAGCCACGAGGGTGACATCGACGCCCGGCGCTATCCGCAGGCGGCGGCGTCAGTGCTCAACTATGGCCTGCCGCCG
CTGGCGGGCAGCTTTATGTATGAGCATAAGTGGGACGATATCAGCGAGGCGATCCGGCGCGCCATTATCCGTTTCGAACC
CCGGCTGAACGCCGCCACACTCAGGGTCACGCCCTTGCTCGATAAAACCCGGCAGGGTAGCTATAACACGCTACAGTTTG
AAATTCGCGGACAAATTCTGACGCAGCCGTATCCCACGGAGTTTCTGGTACGCAGCGCGCTGGATATGGAGCTGAGCCGC
ATTACGTTCTTTTAA
ATGAGCACGTCTCGTTTTACACCCGCTAACCACCTGCTGCCCACGCTGTTTGATCGGCTGTGTGACAATGCTCCGTATCA
GAAAATTGACCGGGATATCAGCGTCACGCCGGTACAACTGAAGGAGATCATTCGCCGGGATCTCTCCTTTTTGCTCAATA
CCATTAGCCACGAGGGTGACATCGACGCCCGGCGCTATCCGCAGGCGGCGGCGTCAGTGCTCAACTATGGCCTGCCGCCG
CTGGCGGGCAGCTTTATGTATGAGCATAAGTGGGACGATATCAGCGAGGCGATCCGGCGCGCCATTATCCGTTTCGAACC
CCGGCTGAACGCCGCCACACTCAGGGTCACGCCCTTGCTCGATAAAACCCGGCAGGGTAGCTATAACACGCTACAGTTTG
AAATTCGCGGACAAATTCTGACGCAGCCGTATCCCACGGAGTTTCTGGTACGCAGCGCGCTGGATATGGAGCTGAGCCGC
ATTACGTTCTTTTAA