Detailed information of component protein


Summary

Component ID T6CP005179
Component protein type TssB
T6SS ID (Type) T6SS00081 experimental (Type ii)
Strain Francisella tularensis subsp. tularensis SCHU S4
Replicon chromosome
Sequence Protein sequence (185 a.a.); Nucleotide sequence (555 bp)
Reference
[1] Bröms JE, Meyer L, Sun K, et al. Unique substrates secreted by the type VI secretion system of Francisella tularensis during intramacrophage infection. PLoS One. 2012;7(11):e50473. doi: 10.1371/journal.pone.0050473. Epub 2012 Nov 20. PMID: 23185631
[2] Nano FE, Schmerk C. The Francisella pathogenicity island. Ann N Y Acad Sci. 2007 Jun;1105:122-37. Epub 2007 Mar 29. PMID: 17395722
[3] Long ME, Lindemann SR, Rasmussen JA, et al. Disruption of Francisella tularensis Schu S4 iglI, iglJ, and pdpC genes results in attenuation for growth in human macrophages and in vivo virulence in mice and reveals a unique phenotype for pdpC. Infect Immun. 2013 Mar;81(3):850-61. doi: 10.1128/IAI.00822-12. Epub 2012 Dec 28. PMID: 23275090
[4] Long ME, Lindemann SR, Rasmussen JA, et al. Disruption of Francisella tularensis Schu S4 iglI, iglJ, and pdpC genes results in attenuation for growth in human macrophages and in vivo virulence in mice and reveals a unique phenotype for pdpC. Infect Immun. 2013 Mar;81(3):850-61. doi: 10.1128/IAI.00822-12. Epub 2012 Dec 28. PMID: 23275090
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) FTT_RS07125
Coordinate (Strand) 1400818..1401372 (-)
NCBI ID WP_003022153.1
RefSeq NC_006570
Uniprot ID UPI0000F591B0
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 2.7e-41 4..155

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-184 MAKNKIPNSRLMINYETNVDGVLKKKELPYRVLVVGDLSKGRSVDAKKEFADREVRRVNNGVDRVLEEMNISFDFEAPNFVSKDRSNLKVNYRIESVKDFRPDAVAKKVPEIRALLEMKEILASFAKDIENNRNLKKTIDMIFSDSNELESLKSKIPALTNYTIKDSCDAAESQDLSNQQVDGK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9972 - -



  Protein sequence: 185 a.a.    

>T6CP005179 NC_006570:c1401372-1400818 [Francisella tularensis subsp. tularensis SCHU S4] [TssB]
MAKNKIPNSRLMINYETNVDGVLKKKELPYRVLVVGDLSKGRSVDAKKEFADREVRRVNNGVDRVLEEMNISFDFEAPNF
VSKDRSNLKVNYRIESVKDFRPDAVAKKVPEIRALLEMKEILASFAKDIENNRNLKKTIDMIFSDSNELESLKSKIPALT
NYTIKDSCDAAESQDLSNQQVDGK*

  Nucleotide sequence: 555 bp    

>T6CP005179 NC_006570:c1401372-1400818 [Francisella tularensis subsp. tularensis SCHU S4] [TssB]
ATGGCAAAAAATAAAATCCCAAATTCAAGGTTGATGATAAATTATGAAACTAATGTTGATGGTGTCTTAAAGAAAAAAGA
GCTACCTTACAGAGTCCTAGTTGTTGGCGATTTATCAAAAGGAAGATCTGTGGATGCAAAAAAAGAGTTCGCAGATAGAG
AGGTCAGAAGAGTAAATAATGGTGTTGATAGGGTTTTAGAAGAGATGAATATATCTTTTGATTTTGAGGCACCAAACTTT
GTTTCTAAAGATCGTAGTAATTTAAAAGTTAATTATAGAATTGAAAGTGTCAAAGATTTTAGACCTGATGCTGTTGCTAA
AAAAGTTCCTGAAATCAGAGCGCTGCTTGAAATGAAAGAGATATTAGCATCCTTTGCTAAGGACATTGAAAATAATCGTA
ATCTCAAGAAAACCATAGATATGATTTTTTCAGATAGTAACGAATTAGAATCATTAAAGAGTAAGATTCCTGCTTTGACA
AACTATACGATTAAAGACTCTTGTGATGCTGCTGAGTCTCAAGACTTAAGTAATCAACAAGTAGATGGTAAGTAG