Detailed information of component protein


Summary

Component ID T6CP005157
Component protein type TssC
T6SS ID (Type) T6SS00485 insolico (Type i1)
Strain Escherichia coli 042
Replicon chromosome
Sequence Protein sequence (495 a.a.); Nucleotide sequence (1485 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) EC042_RS01205
Coordinate (Strand) 261106..262590 (-)
NCBI ID WP_000111580.1
RefSeq NC_017626
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.4e-118 68..367
VipB_2 PF18945.2 1.4e-44 381..491
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-494 MSVKEDIAPVSASQTAAPPSLLDEIMAQTRVQPKSESYDITRQGVSAFIAAMLQGDSSAEPINILAVDAMIADIDARTSRQMDAIIHAPEFQELESLLRSLKLLVERADTRENIKVHFLNVTQEELLDDFEFAPEITQSAYYKHVYSSGYGQFGGEPVAAVIGNFAFKNTTPDMKLLKYISQVSAMAHSPFLSSVSSEFFGLDSWTELPGIKEPGAIFEGPAYSRWRALRESEDSRYLGLTAPRFLLRHPYSPDENPARTFRYHEDVSQSHESYLWGNTSFLLAANLAESFAKYRWCPNIIGPSSGGAVKDLPVHLYESMGQMQAKIPTEVLITDRREYELAEEGFITLTMRKGSDNACFFSANSVQKPKKFPKTPEGKAAETNYKLGTQLPYLFVISRLAHYIKVIQREQLGSWKERSDLERELNTWIRQYVADQENPPAEVRSHRPLRQAKIEVLDVDGEPGWYQVAISVRPHFKYMGASFDLSLVGRLDKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9703 - -


  Protein sequence: 495 a.a.    

>T6CP005157 NC_017626:c262590-261106 [Escherichia coli 042] [TssC]
MSVKEDIAPVSASQTAAPPSLLDEIMAQTRVQPKSESYDITRQGVSAFIAAMLQGDSSAEPINILAVDAMIADIDARTSR
QMDAIIHAPEFQELESLLRSLKLLVERADTRENIKVHFLNVTQEELLDDFEFAPEITQSAYYKHVYSSGYGQFGGEPVAA
VIGNFAFKNTTPDMKLLKYISQVSAMAHSPFLSSVSSEFFGLDSWTELPGIKEPGAIFEGPAYSRWRALRESEDSRYLGL
TAPRFLLRHPYSPDENPARTFRYHEDVSQSHESYLWGNTSFLLAANLAESFAKYRWCPNIIGPSSGGAVKDLPVHLYESM
GQMQAKIPTEVLITDRREYELAEEGFITLTMRKGSDNACFFSANSVQKPKKFPKTPEGKAAETNYKLGTQLPYLFVISRL
AHYIKVIQREQLGSWKERSDLERELNTWIRQYVADQENPPAEVRSHRPLRQAKIEVLDVDGEPGWYQVAISVRPHFKYMG
ASFDLSLVGRLDKE*

  Nucleotide sequence: 1485 bp    

>T6CP005157 NC_017626:c262590-261106 [Escherichia coli 042] [TssC]
ATGTCAGTAAAGGAAGATATTGCTCCCGTCAGCGCGTCGCAAACCGCCGCGCCCCCATCTCTGCTTGATGAAATCATGGC
GCAAACCCGCGTCCAGCCTAAATCAGAAAGCTACGATATCACCCGCCAGGGCGTGAGCGCCTTTATTGCCGCCATGTTAC
AGGGCGACAGTAGCGCTGAACCTATCAATATCCTGGCCGTTGACGCCATGATTGCTGATATTGATGCCCGAACCAGCAGG
CAGATGGATGCCATTATTCATGCCCCGGAGTTTCAGGAACTGGAATCCCTGCTGCGCTCGCTGAAGCTGCTGGTTGAACG
CGCGGATACACGGGAAAACATCAAGGTCCATTTCCTGAATGTCACTCAGGAAGAACTGCTGGATGATTTCGAATTTGCAC
CTGAAATCACGCAGTCTGCGTATTACAAGCATGTATATTCAAGCGGTTACGGACAATTTGGCGGTGAGCCAGTGGCGGCG
GTAATCGGCAACTTTGCCTTTAAGAACACCACGCCGGATATGAAGTTGCTGAAATATATCAGCCAGGTCAGTGCGATGGC
GCACAGCCCGTTCCTCTCATCAGTATCATCCGAATTTTTCGGTCTGGACTCATGGACAGAGTTACCAGGGATCAAAGAAC
CAGGAGCAATCTTTGAAGGCCCGGCCTATTCCCGCTGGCGTGCCTTGCGTGAATCTGAAGATTCACGCTACCTGGGACTG
ACTGCCCCCCGGTTCCTGCTGCGTCACCCTTACTCGCCAGATGAGAACCCAGCCAGGACCTTCCGTTACCATGAAGACGT
CAGCCAGAGTCACGAGTCTTATTTGTGGGGGAACACCTCGTTTTTACTAGCTGCGAACCTGGCTGAAAGTTTTGCTAAAT
ATCGCTGGTGTCCCAATATCATTGGCCCTTCCAGCGGCGGCGCAGTCAAAGACCTCCCGGTGCATCTGTATGAATCCATG
GGGCAAATGCAGGCAAAAATTCCGACTGAAGTGTTGATCACTGACCGGAGAGAGTATGAGCTGGCGGAAGAAGGCTTTAT
CACACTGACCATGCGTAAAGGATCTGATAATGCGTGCTTTTTCTCGGCCAACTCGGTGCAGAAACCCAAAAAATTCCCCA
AAACCCCCGAAGGCAAGGCTGCGGAGACCAACTATAAACTCGGCACTCAGCTGCCATACTTATTTGTAATCAGTAGGTTA
GCGCATTACATCAAGGTAATTCAGCGCGAACAGCTTGGCTCATGGAAAGAACGCAGTGACCTGGAGCGTGAGCTGAACAC
CTGGATTCGCCAGTATGTGGCCGACCAGGAGAATCCGCCTGCCGAAGTCCGCAGCCACCGACCATTACGTCAGGCGAAGA
TCGAGGTACTTGATGTGGATGGTGAGCCAGGCTGGTACCAGGTCGCGATTTCTGTCAGACCGCATTTTAAATACATGGGT
GCCAGTTTCGACCTGAGTCTGGTCGGACGACTGGATAAGGAATAA