Detailed information of component protein


Summary

Component ID T6CP005156
Component protein type TssF
T6SS ID (Type) T6SS00485 insolico (Type i1)
Strain Escherichia coli 042
Replicon chromosome
Sequence Protein sequence (614 a.a.); Nucleotide sequence (1842 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) EC042_RS01195
Coordinate (Strand) 258829..260670 (-)
NCBI ID WP_000863395.1
RefSeq NC_017626
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 9.6e-124 6..609
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-613 VAFEERYYREELDYLRQLGKLLAQEKPHLAHFLAEKEGDPDVERLMEAFAFMSGSLRQKLEDEFPEFTHGLIRMLWANYLRPVPAMTVIAYEPKTDQLKVPVQVCRNELIRSRSEKSALAAQKVLSDNHDKIVSSVACHFTLARDIWLQPLRILDTHNASSLKEGIIDISFTADNNVSPAMLDLNKITFWLGNEDDYTRHQLYLWFCECLMDAELIAGEYRLPLPDLWLEAAGFENQDALLPWPKNVHSGYRVLQEYFCYPEAFFFFHLRDVAPLPDDFPASAFTLRLHFNRPLPADIKLRRDSLRLHCTPAINLFTHYAEPVRPDGRIAEYPLRASHRHPDAYDIFQISTVTSKVKVSGTESNPGSQARVWPEFESFQHQMEYSRQREVVYWHHRTKTSLFHRGLEHSIAFVHADGSIPDSSRFNDDVITTSLICTNRMIPARLHIGDICVAVNKNPAVASFHNVTRPTQPLWPVTDGDMHWSLISAMNLNYLSLLDRETLIQILRTFDLPGAHHPQRARLSRQKLDAIEKLETKPVDRLFKGVPVRGLATTLWIRPDPFICEGEIYLLGTVLSHFFALYASINSYHCLKIINTESQEAWEWQEKMGQHALI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9951 - -


  Protein sequence: 614 a.a.    

>T6CP005156 NC_017626:c260670-258829 [Escherichia coli 042] [TssF]
VAFEERYYREELDYLRQLGKLLAQEKPHLAHFLAEKEGDPDVERLMEAFAFMSGSLRQKLEDEFPEFTHGLIRMLWANYL
RPVPAMTVIAYEPKTDQLKVPVQVCRNELIRSRSEKSALAAQKVLSDNHDKIVSSVACHFTLARDIWLQPLRILDTHNAS
SLKEGIIDISFTADNNVSPAMLDLNKITFWLGNEDDYTRHQLYLWFCECLMDAELIAGEYRLPLPDLWLEAAGFENQDAL
LPWPKNVHSGYRVLQEYFCYPEAFFFFHLRDVAPLPDDFPASAFTLRLHFNRPLPADIKLRRDSLRLHCTPAINLFTHYA
EPVRPDGRIAEYPLRASHRHPDAYDIFQISTVTSKVKVSGTESNPGSQARVWPEFESFQHQMEYSRQREVVYWHHRTKTS
LFHRGLEHSIAFVHADGSIPDSSRFNDDVITTSLICTNRMIPARLHIGDICVAVNKNPAVASFHNVTRPTQPLWPVTDGD
MHWSLISAMNLNYLSLLDRETLIQILRTFDLPGAHHPQRARLSRQKLDAIEKLETKPVDRLFKGVPVRGLATTLWIRPDP
FICEGEIYLLGTVLSHFFALYASINSYHCLKIINTESQEAWEWQEKMGQHALI*

  Nucleotide sequence: 1842 bp    

>T6CP005156 NC_017626:c260670-258829 [Escherichia coli 042] [TssF]
GTGGCTTTTGAAGAACGTTACTACCGCGAAGAGCTGGATTATCTTCGCCAGCTTGGCAAACTGCTGGCGCAGGAAAAACC
ACATCTGGCCCACTTTCTGGCCGAGAAAGAGGGTGATCCGGACGTGGAGCGTCTGATGGAAGCCTTTGCCTTTATGTCCG
GTAGCCTGCGTCAGAAACTTGAGGACGAATTCCCCGAATTCACCCATGGGCTAATCCGTATGCTGTGGGCAAACTATTTA
CGCCCAGTTCCGGCCATGACGGTTATTGCCTATGAACCCAAAACCGATCAGTTAAAAGTCCCTGTTCAAGTCTGCCGTAA
TGAACTGATCAGAAGCCGCTCAGAAAAGTCCGCCCTGGCTGCTCAGAAGGTGCTGTCTGACAATCATGATAAAATCGTTT
CTTCCGTAGCCTGTCATTTCACGCTGGCGCGCGATATCTGGCTGCAACCACTGCGCATTCTCGACACCCACAACGCCAGC
AGCCTGAAAGAAGGCATCATAGATATCAGTTTTACCGCAGATAACAATGTCTCCCCCGCCATGCTTGACCTGAACAAAAT
AACGTTCTGGCTGGGTAATGAAGACGATTATACCCGACACCAACTTTATCTGTGGTTTTGCGAATGCCTGATGGATGCGG
AACTGATTGCCGGAGAGTACCGCCTGCCGCTGCCGGATCTGTGGCTGGAGGCCGCCGGATTTGAAAACCAGGACGCACTG
CTGCCGTGGCCGAAAAATGTCCACAGCGGCTATCGGGTACTCCAGGAGTATTTCTGCTATCCCGAAGCCTTCTTTTTTTT
CCATCTGCGCGATGTTGCGCCACTACCGGACGATTTCCCGGCCAGCGCGTTTACGCTGCGCCTGCACTTTAACCGCCCGT
TACCTGCCGACATCAAGCTACGCCGGGACTCACTGCGTCTGCACTGTACGCCAGCCATTAACCTGTTTACGCATTATGCG
GAACCCGTCAGGCCTGATGGGCGGATAGCGGAATACCCGCTGCGCGCCAGCCACCGGCATCCCGACGCTTATGACATTTT
TCAGATAAGCACAGTCACCAGCAAAGTCAAAGTTTCAGGTACTGAATCCAACCCTGGCAGCCAGGCGCGTGTCTGGCCCG
AATTTGAAAGTTTCCAGCACCAGATGGAGTACAGCCGCCAGCGGGAAGTCGTCTACTGGCATCACCGGACTAAAACATCC
CTGTTTCACCGCGGGCTTGAACATAGTATCGCCTTTGTCCATGCGGACGGCAGCATTCCGGACAGCTCACGGTTTAATGA
TGATGTGATCACCACGTCATTAATCTGTACCAACCGTATGATCCCTGCTCGGCTGCATATCGGCGATATCTGCGTGGCCG
TCAACAAAAACCCGGCGGTGGCCTCATTTCATAATGTCACACGCCCGACGCAGCCGCTCTGGCCAGTCACGGACGGCGAC
ATGCACTGGTCGCTGATTTCCGCGATGAACCTGAACTACCTATCCCTGCTGGACAGGGAGACACTGATCCAGATCCTGCG
GACCTTCGACCTGCCAGGCGCTCACCATCCGCAGCGGGCCAGACTGTCGCGCCAGAAACTGGATGCCATAGAAAAACTCG
AAACCAAACCTGTTGACAGGTTGTTTAAAGGCGTGCCGGTTCGCGGGCTGGCGACCACGCTGTGGATACGTCCCGATCCA
TTTATCTGCGAAGGTGAAATTTATCTTCTTGGTACAGTGCTCTCGCACTTTTTTGCTCTCTACGCCAGCATCAATTCGTA
CCACTGTCTGAAAATCATCAACACGGAAAGTCAGGAGGCCTGGGAATGGCAGGAGAAAATGGGTCAGCACGCCCTTATAT
AG