Detailed information of component protein


Summary

Component ID T6CP005153
Component protein type TssK
T6SS ID (Type) T6SS00485 insolico (Type i1)
Strain Escherichia coli 042
Replicon chromosome
Sequence Protein sequence (449 a.a.); Nucleotide sequence (1347 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) EC042_RS01175
Coordinate (Strand) 254649..255995 (-)
NCBI ID WP_000224513.1
RefSeq NC_017626
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.3e-132 20..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-448 MATMKNKVIWQEGLFALPQHFQQQQRHCEYLLNRRLDALGDFFWGFTELSINTELLAQGKIMIDRAAGCMPDGTVFSIPDQDLLPEPFQPGTLSSKESHNIYLALPVISDVINEIQGLHSAGQGTERYRLTHTRVRDFHTDEGDEQPVGLGQLIPRIVSGADDLSAMVTLPLCRILNKNATGALVLDNTFIPTIQAVRVSGLLGAFSGEVQGLLATRAADLAGRIGSPEQSGIADVAEFMMLQMLNRHQMQFTHRSQLHTLHPEAFYQDLVGLLGELMTFTEGNRLPCTVEPYNHRDLTATFTRTVIPELRRALNTVLVPRAQNLPLFFSEGTWIATISDPTLLQSCKLVLAVRARMPYDQVQRQFIQQSKVAATDKIRSVVSVQVPGIPLHTLTAAPRQLPWHEGYVYFELEKGTPAWQDVIKAGALALHISGTFPDLNLQLWAIRG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9952 - -


  Protein sequence: 449 a.a.    

>T6CP005153 NC_017626:c255995-254649 [Escherichia coli 042] [TssK]
MATMKNKVIWQEGLFALPQHFQQQQRHCEYLLNRRLDALGDFFWGFTELSINTELLAQGKIMIDRAAGCMPDGTVFSIPD
QDLLPEPFQPGTLSSKESHNIYLALPVISDVINEIQGLHSAGQGTERYRLTHTRVRDFHTDEGDEQPVGLGQLIPRIVSG
ADDLSAMVTLPLCRILNKNATGALVLDNTFIPTIQAVRVSGLLGAFSGEVQGLLATRAADLAGRIGSPEQSGIADVAEFM
MLQMLNRHQMQFTHRSQLHTLHPEAFYQDLVGLLGELMTFTEGNRLPCTVEPYNHRDLTATFTRTVIPELRRALNTVLVP
RAQNLPLFFSEGTWIATISDPTLLQSCKLVLAVRARMPYDQVQRQFIQQSKVAATDKIRSVVSVQVPGIPLHTLTAAPRQ
LPWHEGYVYFELEKGTPAWQDVIKAGALALHISGTFPDLNLQLWAIRG*

  Nucleotide sequence: 1347 bp    

>T6CP005153 NC_017626:c255995-254649 [Escherichia coli 042] [TssK]
ATGGCAACAATGAAAAACAAGGTGATCTGGCAGGAAGGGCTGTTTGCCCTGCCGCAGCATTTTCAGCAACAGCAGCGTCA
TTGCGAGTACCTGCTGAACCGTCGTCTGGATGCACTGGGTGATTTTTTCTGGGGCTTTACGGAACTCTCCATCAATACCG
AACTGCTTGCCCAGGGCAAAATCATGATTGACCGTGCGGCGGGCTGTATGCCTGACGGCACCGTATTCAGCATTCCCGAC
CAGGATCTGCTGCCGGAACCTTTCCAGCCGGGAACCCTTTCATCGAAAGAGAGCCACAATATTTATCTGGCGCTGCCTGT
AATCAGCGACGTGATCAATGAAATCCAGGGGTTGCACAGCGCCGGTCAGGGTACGGAGCGTTACCGCCTCACCCATACCC
GCGTCCGTGATTTTCACACTGACGAAGGCGACGAACAGCCGGTCGGTCTGGGGCAGTTGATCCCCAGGATAGTCAGCGGC
GCAGATGATCTCAGCGCGATGGTGACCCTCCCCCTGTGCCGTATCCTCAATAAAAATGCTACCGGCGCACTGGTGCTGGA
CAACACCTTTATTCCCACCATTCAGGCCGTCCGTGTCAGCGGGTTGCTCGGGGCATTCTCCGGCGAGGTGCAGGGGCTGC
TTGCCACCCGCGCCGCCGACCTGGCCGGGCGCATCGGTTCGCCTGAACAGAGCGGGATCGCCGATGTGGCCGAATTTATG
ATGTTGCAGATGCTTAACCGCCATCAAATGCAGTTCACGCACCGTTCACAACTGCACACGCTGCATCCGGAAGCCTTCTA
CCAAGATCTGGTGGGGCTGCTGGGAGAACTGATGACCTTTACCGAAGGTAATCGCCTGCCCTGCACCGTGGAGCCGTATA
ATCACCGGGATCTTACCGCGACCTTCACCAGAACCGTGATCCCGGAACTGCGGCGCGCACTCAATACCGTACTGGTGCCG
CGTGCGCAGAATCTGCCGCTGTTCTTTTCAGAGGGGACCTGGATCGCCACCATCAGCGATCCCACACTGTTGCAGTCCTG
CAAGCTGGTACTGGCAGTGCGCGCCAGGATGCCCTACGACCAGGTACAACGCCAGTTCATCCAGCAGTCAAAAGTGGCCG
CTACCGACAAAATCCGCAGCGTGGTCAGCGTGCAGGTGCCGGGTATTCCGCTGCACACTCTTACCGCTGCGCCGCGTCAG
TTGCCCTGGCATGAAGGTTATGTTTACTTCGAACTGGAAAAAGGCACCCCAGCCTGGCAGGACGTGATAAAAGCGGGCGC
GCTGGCGCTGCATATCTCCGGCACCTTCCCCGATCTGAACCTTCAGCTCTGGGCGATAAGGGGATAA