Detailed information of component protein


Summary

Component ID T6CP005143
Component protein type TssF
T6SS ID (Type) T6SS00464 experimental (Type i4b)
Strain Escherichia coli 042
Replicon chromosome
Sequence Protein sequence (601 a.a.); Nucleotide sequence (1803 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 4895974..4897776 (+)
NCBI ID WP_001390300.1
RefSeq NC_017626
Uniprot ID A0A222QQF7_ECOLX, D3GUZ3_ECO44, A0A2H3M0V1_ECOLX, B7LFR1_ECO55
KEGG ID elo:EC042_4566, eck:EC55989_3294
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-600 MNKLLSYYQKELAFLRKQGIEFAKKYPKVARRLGYNQGGSEDPHVQRLTESFAFLSSKIHQRLDEDLPELMEALLRNLAPQFLYNYPSSCIVSFEPDRKSSGITSTYRVPSGTSLYSRYKYKTICQFRTVYPLTIVPATVNKARIHYDNSSSLWKIELNLDVFDGANFSLDFVRFYLNGPATVTGIIYTLLCDEVDNIVLQRNNDVLYDISANISGAGFYESEVTLPQKGNVSYIHNLILDYFSFPERFNFIDIEFDSGIELCSGDSVRIEITLKSSAEKYEPDRIERNVSERLFKVNCSPVVNLFEKKTEPLRLSDGQDEYQVNTDLYSRNEVLIWDINKVTLHRYENDIVKQFPLKNLFGLEHSVIKQSCNIFWHSSCYRSSSERGNFEESVYIRLSDDGGAQSCIMTGDVLSIDAICTNGNIPSSINNGDPDGDFDCDIDIAQLRITALNRPSRMLPAMALKGMNWRIVSQLSLNFVLLSGTDGAMKLREMLSIYNYNNNHSISIFIEWIKELQITPVSSRLPGIYPPVTARGIDITVTLSKDADMHPECFMFCSFLDHFLGLHAPVNSFTRMITVIEHEEHTRRVWPIRAGKLTWL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9898 - -


  Protein sequence: 601 a.a.    


  Nucleotide sequence: 1803 bp