Detailed information of component protein


Summary

Component ID T6CP004621
Component protein type TssG
T6SS ID (Type) T6SS00443 experimental (Type i3)
Strain Methylomonas methanica MC09
Replicon chromosome
Sequence Protein sequence (355 a.a.); Nucleotide sequence (1065 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) METME_RS04335
Coordinate (Strand) 922700..923764 (+)
NCBI ID WP_013817563.1
RefSeq NC_015572
Uniprot ID G0A6J4_METMM
KEGG ID mmt:Metme_0857
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2e-109 20..332
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-354 MADQNRTPAHVLIDELEQAAYRFDFFETLRWVEALNVDKPRLGTAVKLSEDAVRLSQEPELQFPASTLASCHVGGSGAPRLAVNFLGLFGPNGPLPLHLTEYARERLRNHHDPTMARFADIFHHRMISLFYRAWANPRPTVSYDRPHADRFGFYVGSLLGLGGEAFRHRDALDDRAKFYYAGHFSAQTKSPDSLQAIIADILSIQVRIEEFVGEWMEIQTSDHSRLGYTPELATLGQSTLLGAFVWGCQHKFRIVLGPLKLAQYLALLPGAAGLAKLAATVRNFLGDELVWDAQLILHKNEVPSELSLGVPAKAGPSSMNGEARLGWSMWLGPRPGPHDADDLTLNPFFAASKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9963 - -


  Protein sequence: 355 a.a.    

>T6CP004621 NC_015572:922700-923764 [Methylomonas methanica MC09] [TssG]
MADQNRTPAHVLIDELEQAAYRFDFFETLRWVEALNVDKPRLGTAVKLSEDAVRLSQEPELQFPASTLASCHVGGSGAPR
LAVNFLGLFGPNGPLPLHLTEYARERLRNHHDPTMARFADIFHHRMISLFYRAWANPRPTVSYDRPHADRFGFYVGSLLG
LGGEAFRHRDALDDRAKFYYAGHFSAQTKSPDSLQAIIADILSIQVRIEEFVGEWMEIQTSDHSRLGYTPELATLGQSTL
LGAFVWGCQHKFRIVLGPLKLAQYLALLPGAAGLAKLAATVRNFLGDELVWDAQLILHKNEVPSELSLGVPAKAGPSSMN
GEARLGWSMWLGPRPGPHDADDLTLNPFFAASKA*

  Nucleotide sequence: 1065 bp    

>T6CP004621 NC_015572:922700-923764 [Methylomonas methanica MC09] [TssG]
ATGGCCGACCAGAATCGGACGCCGGCACACGTTTTAATCGACGAGCTGGAGCAGGCCGCGTACCGTTTCGATTTTTTTGA
AACGCTACGCTGGGTCGAAGCGCTAAACGTCGATAAGCCCAGGTTGGGGACTGCTGTTAAGCTTAGCGAAGATGCGGTTC
GCCTGTCTCAAGAGCCCGAGTTGCAATTTCCGGCCTCGACATTAGCCTCTTGTCATGTGGGGGGCTCGGGAGCTCCCCGA
TTAGCCGTCAATTTTTTGGGATTGTTCGGCCCCAATGGTCCCTTACCCTTGCATTTGACCGAATATGCCAGGGAGCGTCT
AAGGAATCATCACGATCCGACCATGGCGCGCTTCGCCGATATTTTCCATCACCGCATGATCAGTTTGTTTTACCGGGCCT
GGGCCAACCCCAGGCCAACGGTCAGCTACGATAGGCCGCATGCGGACCGGTTTGGTTTTTATGTGGGTTCGTTGCTGGGC
TTGGGGGGTGAAGCGTTTCGGCATCGGGATGCCTTGGACGACAGGGCCAAGTTTTATTATGCCGGACATTTTTCCGCGCA
AACTAAATCGCCGGACAGCTTGCAGGCCATTATTGCCGACATTTTATCGATCCAGGTCCGCATAGAAGAGTTTGTCGGCG
AATGGATGGAGATTCAGACCAGCGATCATAGTCGTCTGGGCTATACGCCGGAGTTAGCCACCTTGGGACAATCGACTTTA
TTGGGGGCTTTTGTCTGGGGCTGTCAGCATAAATTCAGAATCGTGCTGGGGCCGTTGAAACTGGCGCAATATCTGGCCTT
GTTGCCGGGCGCCGCGGGTTTGGCCAAATTAGCCGCTACCGTGCGCAATTTTTTGGGGGACGAATTGGTTTGGGATGCCC
AGCTGATTCTGCACAAAAATGAAGTGCCGTCGGAATTGAGTTTGGGCGTGCCCGCCAAAGCTGGTCCGTCCAGTATGAAC
GGTGAAGCCCGATTGGGCTGGAGTATGTGGCTGGGGCCGCGGCCTGGCCCGCATGACGCCGATGATTTAACCCTCAATCC
ATTCTTTGCCGCGAGCAAAGCATAA