Detailed information of component protein


Summary

Component ID T6CP004619
Component protein type TssE
T6SS ID (Type) T6SS00443 experimental (Type i3)
Strain Methylomonas methanica MC09
Replicon chromosome
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) METME_RS04325
Coordinate (Strand) 920347..920850 (+)
NCBI ID WP_013817561.1
RefSeq NC_015572
Uniprot ID G0A6J2_METMM
KEGG ID mmt:Metme_0855
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 8.6e-22 39..142

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-167 MAELVAKERLQPSLLDRLTDYSPTDKTESREQRVMSYRQLRQSVLRDISWLLNTTAFEALEDLSAAPYVARSVINYGIPALSGTNFSSVDAGVLERKLKQAIVDFEPRILADSLRIEIIIASEQMSHNSLSFKIEGDLWAQPLPVHLFIRSDLDLETGEVTVKEVGG



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9957 - -



  Protein sequence: 168 a.a.    

>T6CP004619 NC_015572:920347-920850 [Methylomonas methanica MC09] [TssE]
MAELVAKERLQPSLLDRLTDYSPTDKTESREQRVMSYRQLRQSVLRDISWLLNTTAFEALEDLSAAPYVARSVINYGIPA
LSGTNFSSVDAGVLERKLKQAIVDFEPRILADSLRIEIIIASEQMSHNSLSFKIEGDLWAQPLPVHLFIRSDLDLETGEV
TVKEVGG*

  Nucleotide sequence: 504 bp    

>T6CP004619 NC_015572:920347-920850 [Methylomonas methanica MC09] [TssE]
ATGGCCGAGCTTGTAGCTAAAGAACGCCTGCAGCCATCCTTGCTGGACAGGCTCACGGACTATTCGCCGACGGATAAAAC
CGAGTCGCGCGAGCAGCGAGTTATGTCTTACCGGCAATTGCGGCAAAGCGTATTACGGGATATCAGTTGGCTATTAAATA
CCACGGCGTTTGAGGCGCTTGAAGACTTGTCCGCCGCGCCTTATGTGGCGCGTTCCGTTATCAATTACGGCATACCGGCA
CTTTCCGGCACCAACTTCAGCAGCGTTGATGCCGGCGTATTGGAACGCAAATTAAAACAGGCTATCGTCGATTTCGAGCC
CAGGATTCTGGCCGATTCGCTTAGAATTGAAATCATAATCGCCAGTGAACAAATGAGTCATAACTCGCTGTCTTTTAAAA
TCGAAGGCGATTTATGGGCGCAACCTTTGCCGGTTCACCTGTTTATTCGTAGCGATCTCGATTTGGAGACCGGCGAAGTC
ACCGTTAAGGAAGTGGGTGGTTAG