Detailed information of component protein


Summary

Component ID T6CP004074
Component protein type TssF
T6SS ID (Type) T6SS00396 experimental (Type i2)
Strain Enterobacter cloacae subsp. cloacae ATCC 13047
Replicon chromosome
Sequence Protein sequence (499 a.a.); Nucleotide sequence (1497 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ECL_RS08955
Coordinate (Strand) 1841163..1842659 (+)
NCBI ID -
RefSeq NC_014121
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 1.1e-129 11..495
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-498 TRNLIYSTKPPDWREMKEPMRIDKGFEVNSRPIGEKGTRCRYTTTQEITLQPLALEHARLSTDPDGRSVISLRFSCSHLADWSCVDLSQIPFYFNADAPLACAMHEAFTMNTARLWLRMPGDTDRRPLDGYFTALGFGEDDRLWPKGDSSFSGYQLLLEYFTFREKFMFTGLRGLESVAFPAELPWFEIDVVLAERWEHDFSFTEKHLRLNCVPVINLFPLESDPLTLNSLQTEYMLRPMRVQDGHTEIYTVDSVMSSSQHTYVPFSSFRHKGGMMRHEAPEYYYHTRVRRGPSGLHNTWLILGGEAFDNHTVPEDESLSLTLTGTNGQLPRRALQSTVLDTVMKTTSANIAVRNLCAPTLPCYPPAQDRFHWRVLSHLGSGFLSMMDNADVLRGTLALYEWTDSEMNRRRLEAILDVKHSETVRFEQGYLVRGVQIEVTLDSHGFAGRGDICLFGEMLSRFFALYTDIYLFNRLIIILQPTGERLEWEEKHSRRIPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9768 - -


  Protein sequence: 499 a.a.    

>T6CP004074 NC_014121:1841163-1842659 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssF]
TRNLIYSTKPPDWREMKEPMRIDKGFEVNSRPIGEKGTRCRYTTTQEITLQPLALEHARLSTDPDGRSVISLRFSCSHLA
DWSCVDLSQIPFYFNADAPLACAMHEAFTMNTARLWLRMPGDTDRRPLDGYFTALGFGEDDRLWPKGDSSFSGYQLLLEY
FTFREKFMFTGLRGLESVAFPAELPWFEIDVVLAERWEHDFSFTEKHLRLNCVPVINLFPLESDPLTLNSLQTEYMLRPM
RVQDGHTEIYTVDSVMSSSQHTYVPFSSFRHKGGMMRHEAPEYYYHTRVRRGPSGLHNTWLILGGEAFDNHTVPEDESLS
LTLTGTNGQLPRRALQSTVLDTVMKTTSANIAVRNLCAPTLPCYPPAQDRFHWRVLSHLGSGFLSMMDNADVLRGTLALY
EWTDSEMNRRRLEAILDVKHSETVRFEQGYLVRGVQIEVTLDSHGFAGRGDICLFGEMLSRFFALYTDIYLFNRLIIILQ
PTGERLEWEEKHSRRIPG*

  Nucleotide sequence: 1497 bp    

>T6CP004074 NC_014121:1841163-1842659 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssF]
ACCCGAAATCTGATTTATTCAACAAAGCCCCCCGACTGGCGTGAGATGAAAGAACCGATGCGTATTGACAAAGGCTTCGA
AGTAAACTCGCGACCGATCGGTGAAAAAGGCACACGTTGTCGCTACACCACAACTCAAGAGATAACCCTACAGCCACTGG
CACTGGAGCATGCCCGCCTGTCGACTGATCCGGACGGGCGTTCGGTCATCAGCCTGCGCTTCAGCTGCAGCCATCTGGCT
GACTGGAGTTGTGTCGATCTCAGCCAGATCCCGTTCTATTTCAATGCTGACGCACCACTGGCCTGCGCCATGCATGAAGC
CTTTACCATGAACACTGCGCGCCTCTGGCTGCGGATGCCGGGTGACACGGACAGAAGACCGCTGGACGGGTATTTCACCG
CACTGGGGTTTGGTGAAGATGACAGACTGTGGCCGAAAGGGGACAGCAGTTTCAGCGGTTACCAGTTGCTGCTGGAGTAT
TTCACCTTTCGCGAGAAATTCATGTTTACGGGGCTGCGCGGACTGGAGAGCGTGGCCTTTCCGGCTGAACTCCCCTGGTT
TGAAATCGATGTGGTGCTGGCAGAACGCTGGGAGCACGATTTCAGCTTTACCGAAAAGCATCTGCGCCTGAACTGCGTGC
CGGTGATTAACCTGTTTCCGCTGGAATCTGACCCACTGACGCTTAACTCCTTACAAACCGAATACATGCTGCGCCCGATG
CGTGTGCAGGATGGCCATACCGAGATATACACCGTGGATTCGGTGATGTCATCGAGCCAGCATACCTACGTGCCGTTTTC
GAGCTTCCGTCACAAAGGCGGAATGATGCGTCATGAAGCACCGGAATATTACTACCACACCCGCGTGCGCCGGGGGCCAT
CCGGGTTGCATAACACCTGGCTCATCCTCGGCGGTGAAGCGTTTGATAACCATACGGTGCCGGAAGATGAGAGCCTGTCG
CTGACGCTCACCGGTACCAACGGCCAGCTGCCACGGCGTGCGCTGCAGAGCACTGTACTTGATACGGTGATGAAAACGAC
TTCGGCTAATATTGCCGTGCGCAACCTGTGTGCGCCAACGCTGCCTTGTTATCCACCGGCGCAGGACCGTTTTCACTGGC
GCGTACTGAGTCACCTTGGCAGCGGGTTCCTGTCGATGATGGATAACGCCGATGTGCTGCGCGGGACCCTGGCGCTGTAT
GAATGGACCGACAGCGAGATGAATCGCCGCCGCCTGGAAGCCATCCTCGACGTGAAACACAGTGAAACCGTGCGCTTTGA
GCAGGGCTATCTGGTTCGTGGCGTGCAGATTGAAGTGACGCTGGACAGCCACGGCTTTGCCGGGCGCGGCGACATCTGCC
TGTTTGGCGAGATGCTGAGCCGTTTCTTCGCGCTGTATACCGACATTTATCTGTTTAACCGCCTGATTATCATTCTGCAA
CCGACAGGAGAGCGCCTGGAATGGGAAGAGAAGCACAGTCGCCGCATTCCCGGCTGA