Detailed information of component protein
Summary
| Component ID | T6CP004073 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS00396  (Type i2) |
| Strain | Enterobacter cloacae subsp. cloacae ATCC 13047 |
| Replicon | chromosome |
| Sequence | Protein sequence (1158 a.a.); Nucleotide sequence (3474 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 1834869..1838342 (+) |
| NCBI ID | WP_013096438.1 |
| RefSeq | NC_014121 |
| Uniprot ID | A0A0H3CHJ4_ENTCC |
| KEGG ID | enc:ECL_01813 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-12 | VKLPFAFAPKTT |
| Transmembrane helix | 13-35 | EGRYLAVTLIFFLLLAAMTFMVW |
| Outside | 36-49 | KHPDIAGIQYGSQQ |
| Transmembrane helix | 50-72 | QTYWLIAGGCISGCTLIMLVVHL |
| Inside | 73-383 | WAALSAGKKEFDALVANVSGDDEKKKRENDNDPVHPAVVMCDRIRAHLRSRISLYWRSKTRLLLITGDEAAIEQLVPGLQQQQWLEGNRTVLIYGGSLASEPDREKYIALRKLRRGRPLDGIIRVLPQSLKLTPQISDNDLRGLEKISELLRYSAPVWLWQLCGSNWSQDTRPEQAVGASFPLRANEGDVIRQLERMLPALRTQGMSQVSENNRHDFLLRLGQHLQDGGIVRWTEQLVPWLAASRQRVPLRGLMFSLPEKKTAGTSASTADAEQYIPGSQRHALTLPAIWQGTVDDCPRVRGRRVGMAWEQ |
| Transmembrane helix | 384-406 | TLAWTLMAIIGVWGAGTLLSFAV |
| Outside | 407-1157 | NRSQIVSVAQQAHALVEHPSVSDYQLTALHTLRNDAGRLQHRIQDGAPWYQRFGLDHNQQLLDAMLPWYGVANNRLIRDPANEALKQKLSALANYAPNSDQRARLAKPGYDQLKAWLMMARPDKADGAFYAQTMKTVQPTRMGISAGLWQSLSPDLWAFYISELPAQPQWKITPDAQLVSQGRQVLLQQIGRRNAESTLYENMLKSVRRNFADVSLEDMTGGTDARRLFTTDEVVPGMFTRQAWEGGIQQAIEKAANSRRDEIDWVLSDSRKAVSSDLSPEALKARLTQRYFTDFAGSWLSFLNSLQLNPANNIADVTDQLTLMSDVRQSPLIALMNTLAWQGQTGQQREALSDSIIKSAKDLVGGKDKPAIDQSASGPQGPLDDTFGPLLQLLGKNKGSNVMSADNSLSLQTYLTRITRVRLRLQQVASASDPQAMMQTLAQTVFQGKSVDLTDTQQYGSLISASLGEEWSGFGSTMFVQPLTQAWETVLQPSAASLNDKWSRSVVANWHTAFDGRFPFAASKSDASLPMLAEFVRKDSGRIERFLTTELGGVLHKEGSQWVPDKVNSQGLSFNPSFLRAINQLSQLSDILFTDGSQGISFELQARPVPQVVETQLTVDGQKLHYFNQMADWQSFRWPGDTYKPGTMLTWTTVNAGARLFRDYSGTWGFIRWLDQGKCAQLDRSQWMMSFTAPDGRTLQWVLRSQLGSGPLALLALRGFTLPDQIFSVDSAATAQALMDSTESSDMDGTE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9919 | - | - |
Protein sequence: 1158 a.a.
Nucleotide sequence: 3474 bp