Detailed information of component protein


Summary

Component ID T6CP004072
Component protein type TssH
T6SS ID (Type) T6SS00396 experimental (Type i2)
Strain Enterobacter cloacae subsp. cloacae ATCC 13047
Replicon chromosome
Sequence Protein sequence (753 a.a.); Nucleotide sequence (2259 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ECL_RS08900
Coordinate (Strand) 1825083..1827341 (+)
NCBI ID -
RefSeq NC_014121
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 8.4e-39 478..643
AAA_lid_9 PF17871.3 2.1e-31 246..338
ClpB_D2-small PF10431.11 4.6e-13 649..723
AAA PF00004.31 1.6e-09 106..218
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-752 CDGLWPLLTLGLSQLERLRPLLDAQSDEREEVQQEEELTQGCSVPLSGSEVKEGELNPALQNALDKFTLDVTANAREGKIDPVFGRDTEIRQMVDILSRRRKNNPILVGEPGVGKTALVEGLALRIAEGNVPESLKTVSLRTLDLGLLQAGAGVKGEFEQRLKNVIDAVQQSPSPVLLFIDEAHTIIGAGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDDTACLMLRGLKSRYAQHHGVHITDEAVRAAVTLSRRYLTGRQLPDKAVDLLDTASARIRMSLDTVPEALTRLKAQLTALAMEKQALLQDIATGNTAHGERLAAIEQDEVRIILQLDDLEAQYGQELKLTEALLACRSDISRQAEIADLQSQLATVQQGNPLLGLDVDARTVATVIADWTGVPLSSLMKDEQTELLHLEEHLGKRVVGQGAALNAIAQRLRASKTGLAPENGPQGVFLLTGPSGTGKTETALALADVLYGGEKSLITINLSEYQEPHTVSQLKGSPPGYVGYGQGGILTEAVRKRPYSVVLLDEVEKAHRDVMNLFYQVFDRGFMRDGEGREIDFRNTVILMTSNLGSDHIMQLLDEQPEATEGDLHELLRPSLRDHFQPALLARFQTVIYRPLAEAAMRTIVEMKLAQVSRRLSRHYGLTTKIDESLYDALTAACLLPDTGARNIDSLLNQQILPVLSQQLLTHKAAGQKPQHLSLNWSEEAGIGLEFDCTEGAHA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7914 - -


  Protein sequence: 753 a.a.    

>T6CP004072 NC_014121:1825083-1827341 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssH]
CDGLWPLLTLGLSQLERLRPLLDAQSDEREEVQQEEELTQGCSVPLSGSEVKEGELNPALQNALDKFTLDVTANAREGKI
DPVFGRDTEIRQMVDILSRRRKNNPILVGEPGVGKTALVEGLALRIAEGNVPESLKTVSLRTLDLGLLQAGAGVKGEFEQ
RLKNVIDAVQQSPSPVLLFIDEAHTIIGAGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVK
VDEPDDDTACLMLRGLKSRYAQHHGVHITDEAVRAAVTLSRRYLTGRQLPDKAVDLLDTASARIRMSLDTVPEALTRLKA
QLTALAMEKQALLQDIATGNTAHGERLAAIEQDEVRIILQLDDLEAQYGQELKLTEALLACRSDISRQAEIADLQSQLAT
VQQGNPLLGLDVDARTVATVIADWTGVPLSSLMKDEQTELLHLEEHLGKRVVGQGAALNAIAQRLRASKTGLAPENGPQG
VFLLTGPSGTGKTETALALADVLYGGEKSLITINLSEYQEPHTVSQLKGSPPGYVGYGQGGILTEAVRKRPYSVVLLDEV
EKAHRDVMNLFYQVFDRGFMRDGEGREIDFRNTVILMTSNLGSDHIMQLLDEQPEATEGDLHELLRPSLRDHFQPALLAR
FQTVIYRPLAEAAMRTIVEMKLAQVSRRLSRHYGLTTKIDESLYDALTAACLLPDTGARNIDSLLNQQILPVLSQQLLTH
KAAGQKPQHLSLNWSEEAGIGLEFDCTEGAHA*

  Nucleotide sequence: 2259 bp    

>T6CP004072 NC_014121:1825083-1827341 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssH]
TGCGACGGTTTATGGCCGCTGCTGACGCTGGGGCTGAGCCAGCTTGAGCGTCTGCGACCGCTGCTGGATGCGCAGTCAGA
CGAGCGCGAAGAGGTACAGCAGGAAGAGGAGCTGACGCAGGGCTGCAGCGTGCCGCTGTCCGGCAGTGAGGTGAAAGAGG
GCGAACTGAATCCGGCCCTGCAGAACGCGCTGGACAAGTTCACCCTTGATGTCACCGCTAACGCGCGTGAGGGCAAAATC
GACCCGGTTTTCGGCCGTGATACGGAAATCCGCCAGATGGTGGATATTCTCTCGCGGCGTCGCAAGAACAACCCGATTCT
GGTCGGCGAGCCGGGTGTGGGGAAAACCGCCCTGGTGGAAGGGCTGGCGCTGCGTATCGCCGAAGGGAATGTGCCGGAAT
CGCTGAAAACGGTGAGCCTGCGCACGCTGGACCTCGGTCTGTTACAGGCGGGGGCGGGCGTGAAGGGGGAGTTTGAACAG
CGCCTGAAAAACGTCATTGATGCGGTGCAGCAGTCTCCGTCCCCGGTGCTGCTGTTTATCGACGAAGCGCACACCATTAT
TGGCGCAGGCAACCAGGCGGGCGGCGCGGATGCGGCCAACCTGCTGAAACCGGCGCTCGCCCGCGGCGAACTGCGGACCA
TCGCGGCCACCACCTGGAGTGAATACAAGCAGTATTTTGAGCGCGACGCGGCACTGGAGCGGCGCTTCCAGATGGTGAAA
GTTGATGAGCCGGACGACGACACCGCCTGCCTGATGCTGCGGGGGCTGAAATCCCGCTACGCGCAGCACCACGGGGTGCA
CATTACCGATGAGGCGGTCAGGGCGGCGGTGACCCTTTCCCGTCGTTACCTGACCGGCCGTCAGCTACCGGACAAGGCGG
TTGACCTGCTGGATACCGCCTCCGCCCGTATCCGCATGAGTCTCGATACCGTGCCGGAAGCGCTGACCCGCCTGAAGGCT
CAACTCACGGCCCTGGCGATGGAAAAACAGGCGCTGCTGCAGGATATCGCGACAGGTAACACCGCCCACGGCGAACGTCT
GGCGGCCATCGAACAGGACGAAGTCCGCATCATTCTGCAACTTGATGACCTGGAAGCGCAGTACGGCCAGGAGCTGAAAC
TGACGGAAGCCCTGCTGGCCTGCCGCAGTGATATCTCCCGCCAGGCGGAAATCGCTGACCTGCAGAGCCAGCTTGCCACC
GTGCAGCAGGGGAACCCGCTGCTGGGGCTGGATGTGGACGCGCGTACCGTCGCCACGGTGATTGCCGACTGGACCGGTGT
GCCGCTCTCCTCATTAATGAAGGACGAGCAGACGGAACTGTTACACCTCGAAGAGCACCTCGGTAAACGCGTGGTGGGCC
AGGGCGCGGCGCTGAATGCCATCGCGCAGCGCCTGCGCGCGTCAAAAACTGGGCTTGCGCCGGAGAACGGCCCGCAGGGC
GTGTTCCTGCTGACCGGACCGAGCGGCACCGGCAAGACCGAAACCGCGCTGGCGCTGGCGGACGTGCTGTACGGCGGTGA
AAAATCCCTGATTACCATCAACCTCTCCGAATACCAGGAGCCGCACACCGTCTCCCAGCTTAAGGGTTCCCCGCCGGGCT
ACGTCGGTTACGGTCAGGGCGGTATTCTCACCGAGGCAGTGCGCAAGCGCCCGTACAGCGTGGTGCTGCTCGATGAAGTG
GAGAAAGCGCACCGTGACGTGATGAACCTGTTCTACCAGGTCTTCGACCGCGGCTTTATGCGCGACGGCGAGGGGCGTGA
AATCGACTTCCGTAACACGGTAATTCTGATGACCTCCAACCTCGGCAGCGACCACATCATGCAGCTGCTGGATGAACAGC
CGGAGGCAACAGAAGGTGACCTGCATGAACTGCTGCGTCCGAGCCTGCGTGACCACTTCCAGCCTGCGCTGCTGGCGCGT
TTCCAGACGGTGATTTATCGTCCTCTGGCGGAGGCCGCCATGCGCACCATTGTGGAAATGAAGCTCGCACAGGTGAGCAG
GCGGCTGAGCCGACACTACGGTTTGACCACCAAAATTGATGAGAGCCTGTACGACGCGCTGACCGCGGCCTGCCTGTTGC
CGGATACCGGTGCGCGTAACATCGACAGCCTGCTGAACCAGCAGATTTTACCGGTGCTGAGCCAGCAGTTGCTGACGCAT
AAGGCGGCGGGGCAAAAGCCACAGCACCTGTCCCTCAACTGGAGTGAGGAGGCGGGGATCGGACTGGAGTTTGACTGCAC
AGAAGGAGCGCACGCATGA