Detailed information of component protein


Summary

Component ID T6CP004071
Component protein type TssK
T6SS ID (Type) T6SS00396 experimental (Type i2)
Strain Enterobacter cloacae subsp. cloacae ATCC 13047
Replicon chromosome
Sequence Protein sequence (447 a.a.); Nucleotide sequence (1341 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ECL_RS08885
Coordinate (Strand) 1821558..1822898 (+)
NCBI ID WP_013096430.1
RefSeq NC_014121
Uniprot ID A0A0M7BU68_ENTCL, A0A0H3CJ79_ENTCC
KEGG ID enc:ECL_01803
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 4.3e-135 18..443
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-446 MKTEQPLWGRGQMVSPQHFQQQAAYAAWSAECIARLGLSHPWGVIDATFEPDALKLGRLQARRLHIRFPDGTLIDTDNADDLPPVLALESGSQDAVVVLALPLLRANGGNCLTPDAVAERPVRYRQRWRDIRNAFGDDTRQIAVMKPELTLRFACQDNSDYLTCPVARLQQDSQGAWLLDETFLPPLLALQGSRWLMIQLEQLMSQLRVRLSRLMAMRRESNERMADFAVADVSLFWLLNALNSAEPVLGQFQRHPQSPPERLYPELARLAGSLLTFSLEHQVSAIPVWQHEQQNNVFPPLFDLLGDLLEASLPSRVVAIELEHDARLHFWQARLHDPRLREGADYYLSVRSTVPVAQMQEQFPRQCKVGSPDHVRSIVNSSRVGVPLTPLRHVPAAIPLRLENQYFSLDVSHPQATEMLQGGTCMFYVPGMLGEPELELFAVLRT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9744 - -


  Protein sequence: 447 a.a.    

>T6CP004071 NC_014121:1821558-1822898 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssK]
MKTEQPLWGRGQMVSPQHFQQQAAYAAWSAECIARLGLSHPWGVIDATFEPDALKLGRLQARRLHIRFPDGTLIDTDNAD
DLPPVLALESGSQDAVVVLALPLLRANGGNCLTPDAVAERPVRYRQRWRDIRNAFGDDTRQIAVMKPELTLRFACQDNSD
YLTCPVARLQQDSQGAWLLDETFLPPLLALQGSRWLMIQLEQLMSQLRVRLSRLMAMRRESNERMADFAVADVSLFWLLN
ALNSAEPVLGQFQRHPQSPPERLYPELARLAGSLLTFSLEHQVSAIPVWQHEQQNNVFPPLFDLLGDLLEASLPSRVVAI
ELEHDARLHFWQARLHDPRLREGADYYLSVRSTVPVAQMQEQFPRQCKVGSPDHVRSIVNSSRVGVPLTPLRHVPAAIPL
RLENQYFSLDVSHPQATEMLQGGTCMFYVPGMLGEPELELFAVLRT*

  Nucleotide sequence: 1341 bp    

>T6CP004071 NC_014121:1821558-1822898 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssK]
ATGAAAACGGAACAACCGTTATGGGGCAGGGGCCAGATGGTCTCTCCCCAGCACTTCCAGCAACAGGCCGCGTATGCGGC
CTGGTCTGCGGAATGCATCGCCCGGTTAGGTCTCTCCCATCCCTGGGGAGTGATTGATGCCACTTTCGAACCGGATGCAC
TGAAACTGGGCCGCCTGCAGGCTCGTCGTCTGCACATTCGTTTCCCTGACGGGACGCTTATCGACACTGATAATGCTGAC
GATCTTCCACCGGTTCTGGCGCTTGAGAGTGGATCACAGGATGCGGTGGTGGTGCTGGCCCTCCCGCTGCTGCGGGCGAA
TGGCGGCAACTGTCTTACACCCGATGCGGTGGCCGAACGCCCTGTTCGCTATCGCCAGCGCTGGCGGGATATCCGCAACG
CTTTTGGGGACGACACCCGCCAGATTGCGGTGATGAAACCTGAGCTGACGCTGCGGTTTGCCTGTCAGGACAACAGCGAT
TATCTGACCTGCCCGGTTGCCCGCCTGCAGCAGGATTCGCAGGGGGCATGGTTACTGGATGAGACGTTTCTTCCGCCACT
GCTGGCTCTGCAGGGCAGTCGCTGGCTGATGATCCAGCTGGAACAGCTGATGAGCCAGCTACGTGTACGCCTGAGTCGGC
TGATGGCCATGCGCCGGGAAAGTAATGAGCGGATGGCCGATTTTGCCGTGGCGGATGTGTCCCTGTTCTGGCTGCTCAAT
GCCCTTAACAGCGCAGAACCCGTGCTCGGACAGTTTCAGCGCCACCCGCAAAGCCCGCCGGAGCGTCTGTATCCGGAACT
GGCACGCCTGGCGGGCAGTCTGCTGACTTTCTCGCTGGAGCATCAGGTGAGTGCGATCCCGGTCTGGCAGCACGAGCAAC
AGAATAACGTATTCCCGCCGCTGTTTGATTTACTGGGTGACCTGTTGGAAGCCAGCCTGCCGTCGCGGGTGGTAGCGATT
GAGCTTGAGCATGATGCCAGGCTTCACTTCTGGCAGGCCCGTCTGCATGACCCACGTCTGCGTGAAGGGGCTGATTACTA
CCTCTCGGTGCGTTCAACGGTACCGGTGGCACAAATGCAGGAGCAGTTCCCGCGCCAGTGCAAGGTCGGCAGCCCCGATC
ATGTCAGAAGTATCGTCAATTCATCGCGGGTCGGCGTGCCTCTGACGCCGCTGCGCCATGTACCGGCAGCCATTCCGTTA
CGTCTGGAAAATCAGTATTTCAGTCTTGATGTCTCTCATCCTCAGGCCACTGAAATGCTTCAGGGTGGGACCTGCATGTT
TTACGTTCCGGGCATGCTCGGCGAGCCTGAACTTGAACTCTTTGCGGTGCTGAGAACATGA