Detailed information of component protein


Summary

Component ID T6CP004070
Component protein type TssC
T6SS ID (Type) T6SS00396 experimental (Type i2)
Strain Enterobacter cloacae subsp. cloacae ATCC 13047
Replicon chromosome
Sequence Protein sequence (514 a.a.); Nucleotide sequence (1542 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ECL_RS08880
Coordinate (Strand) 1819999..1821540 (+)
NCBI ID WP_044159362.1
RefSeq NC_014121
Uniprot ID UPI000505521E
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 6.3e-120 86..386
VipB_2 PF18945.2 3.4e-39 396..506
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-513 MSVNTENGSAQGQTTVLEKESVYASLFDKINLTPATSLGDINAFLDDAALSDAPAGERLTAAMQVFMDCIRKSGQPVEKLDKTLIDHHIAELDFQISRQLDAVMHHAEFQKVESLWRGLKQLVDNTDYRQNVKTEILDVSKDDLRQDFEDAPELIQSGLYWHTYTAEYDTPGGEPIGSVISAYEFDASPQDVALLRNISKVSAAAHMPFIGAVGPKFFLKESMEEVAAIKDIGNYFDRAEYIKWKSFRDTDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSASFSFASNMVKSFINNGWCVQIRGPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIEDNPGFFRVKLFAVPHFQVEGMDVNLSLVSQMPKAKAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9858 - -


  Protein sequence: 514 a.a.    

>T6CP004070 NC_014121:1819999-1821540 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssC]
MSVNTENGSAQGQTTVLEKESVYASLFDKINLTPATSLGDINAFLDDAALSDAPAGERLTAAMQVFMDCIRKSGQPVEKL
DKTLIDHHIAELDFQISRQLDAVMHHAEFQKVESLWRGLKQLVDNTDYRQNVKTEILDVSKDDLRQDFEDAPELIQSGLY
WHTYTAEYDTPGGEPIGSVISAYEFDASPQDVALLRNISKVSAAAHMPFIGAVGPKFFLKESMEEVAAIKDIGNYFDRAE
YIKWKSFRDTDDARYIGLVMPRVLGRLPYGPDTVPVRSFNYVEQVKGPDHEKYLWTSASFSFASNMVKSFINNGWCVQIR
GPQAGGAVKDLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANS
RINARLPYIFLLSRIAHYLKLIQRENIGTTKDRRLLELELNTWVRSLVTEMTDPGDELQASHPLRDAKVVVEDIEDNPGF
FRVKLFAVPHFQVEGMDVNLSLVSQMPKAKAKA*

  Nucleotide sequence: 1542 bp    

>T6CP004070 NC_014121:1819999-1821540 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssC]
ATGTCTGTTAATACTGAAAATGGCTCCGCGCAGGGGCAGACCACTGTGCTGGAAAAAGAGAGCGTCTACGCCTCCCTGTT
CGACAAAATCAACCTGACCCCGGCCACAAGCCTGGGCGATATCAATGCGTTTCTGGACGATGCCGCACTGTCTGATGCTC
CGGCAGGTGAGCGCCTGACAGCGGCAATGCAGGTATTTATGGACTGCATCCGCAAATCCGGCCAGCCAGTGGAAAAACTC
GATAAAACCCTGATTGACCACCATATCGCGGAGCTGGATTTCCAAATCAGCCGCCAGCTGGATGCGGTGATGCATCATGC
AGAATTCCAGAAAGTGGAATCCCTGTGGCGCGGCCTGAAGCAACTGGTGGACAACACCGACTACCGCCAGAATGTAAAAA
CGGAAATTCTGGATGTGTCCAAAGACGACCTGCGCCAGGACTTCGAAGATGCGCCGGAACTTATCCAGAGCGGCCTGTAC
TGGCACACCTATACCGCTGAATACGACACCCCGGGCGGCGAGCCGATTGGCTCGGTTATTTCAGCGTACGAATTTGACGC
AAGTCCGCAGGACGTGGCGCTGTTGCGCAATATCTCGAAAGTCTCTGCCGCCGCGCATATGCCGTTTATTGGTGCCGTCG
GGCCGAAATTCTTCCTCAAGGAATCGATGGAAGAGGTGGCCGCGATTAAGGACATCGGTAACTACTTCGACCGTGCCGAA
TACATCAAATGGAAATCCTTCCGCGACACCGACGATGCCCGTTATATCGGCCTGGTGATGCCGCGCGTGCTGGGGCGCCT
GCCTTACGGCCCGGACACGGTGCCGGTGCGCAGTTTCAACTACGTTGAGCAGGTGAAAGGTCCGGACCACGAAAAATACC
TGTGGACAAGCGCATCTTTCTCCTTCGCCTCCAACATGGTGAAGAGCTTCATCAACAACGGCTGGTGCGTGCAAATTCGT
GGCCCGCAGGCAGGTGGGGCCGTGAAAGACCTGCCGATCCACCTGTACGATCTGGGTACCGGCAACCAGGTGAAGATCCC
GTCAGAGGTGATGATCCCGGAAACCCGCGAGTTTGAATTCGCTAACCTGGGCTTTATACCGCTGTCGTACTACAAGAACC
GTGATTACGCCTGCTTCTTCTCGGCGAACTCGGCGCAGAAACCGGCGCTGTACGACACCGCCGACGCCACTGCCAACAGC
CGCATCAATGCCCGTCTGCCGTATATCTTCCTGCTGTCGCGCATTGCGCATTACCTGAAGCTGATTCAGCGCGAAAATAT
CGGTACGACGAAAGATCGCCGTCTGCTGGAGCTGGAACTCAATACATGGGTACGCAGTCTGGTGACCGAAATGACCGATC
CGGGCGACGAACTGCAGGCCTCACACCCGCTGCGCGATGCGAAGGTGGTGGTGGAAGATATTGAGGACAACCCGGGCTTC
TTCCGCGTGAAGCTGTTCGCGGTGCCGCACTTCCAGGTGGAAGGCATGGACGTGAACCTGTCGCTGGTGAGCCAGATGCC
GAAAGCGAAAGCGAAAGCGTAA