Detailed information of component protein


Summary

Component ID T6CP004069
Component protein type TssB
T6SS ID (Type) T6SS00396 experimental (Type i2)
Strain Enterobacter cloacae subsp. cloacae ATCC 13047
Replicon chromosome
Sequence Protein sequence (164 a.a.); Nucleotide sequence (492 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ECL_RS08875
Coordinate (Strand) 1819466..1819957 (+)
NCBI ID WP_013096428.1
RefSeq NC_014121
Uniprot ID A0A0M7BUW3_ENTCL, A0A0H3CHI4_ENTCC
KEGG ID enc:ECL_01801
PDB ID -
Pfam domain hit(s)

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Domain
Pfam ID
E-value
Aligned region
T6SS_VipAPF05591.141.5e-527..157
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Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

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Prediction                
Region    
Sequence
Outside1-163MADTFQNEVPKARINLKLALHTGGAQKKVELPLKLLTVGDFSNGKESRPLSERKKINVNKNNLNSVLSEFNPEVNMTVPNTLAGERTEENVTLRFSDMKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEKILKDPALSQELRNEMSALAPK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
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Prediction       
Probability
Cleavage site
Signal peptide sequence
Other0.9929--


  Protein sequence: 164 a.a.    

>T6CP004069 NC_014121:1819466-1819957 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssB]
MADTFQNEVPKARINLKLALHTGGAQKKVELPLKLLTVGDFSNGKESRPLSERKKINVNKNNLNSVLSEFNPEVNMTVPN
TLAGERTEENVTLRFSDMKDFEPEQVARQIPQLRAMLAMRNLLRDLKSNLLDNATFRKELEKILKDPALSQELRNEMSAL
APK*

  Nucleotide sequence: 492 bp    

>T6CP004069 NC_014121:1819466-1819957 [Enterobacter cloacae subsp. cloacae ATCC 13047] [TssB]
ATGGCTGATACGTTCCAGAACGAAGTGCCTAAGGCACGCATTAATTTAAAACTTGCATTGCATACCGGAGGGGCGCAGAA
GAAAGTTGAGTTACCCCTTAAATTACTCACTGTCGGTGATTTCAGTAACGGCAAAGAGAGCCGGCCATTATCTGAAAGAA
AGAAAATTAACGTCAACAAAAATAACCTCAATAGTGTACTTTCGGAATTTAACCCGGAGGTCAACATGACGGTTCCGAAT
ACGCTGGCGGGTGAGCGTACGGAAGAGAATGTGACGCTGCGCTTTTCAGATATGAAAGATTTTGAACCCGAACAGGTGGC
CCGACAAATTCCCCAACTTCGTGCCATGCTGGCGATGCGTAATTTATTACGTGACCTCAAGTCCAATCTGCTGGATAACG
CCACTTTCAGAAAAGAGCTCGAGAAAATTCTTAAGGATCCGGCGCTGTCTCAGGAATTACGTAACGAAATGAGTGCCCTG
GCCCCGAAATAA