Detailed information of component protein


Summary

Component ID T6CP003921
Component protein type TssJ
T6SS ID (Type) T6SS00382 experimental (Type i3)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (171 a.a.); Nucleotide sequence (513 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) XBJ1_RS08970
Coordinate (Strand) 2071856..2072368 (-)
NCBI ID WP_143827727.1
RefSeq NC_013892
Uniprot ID UPI00117D83C2
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 1.1e-20 36..135

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-3 MMV
Transmembrane helix 4-26 ILFLHVLVFNLIIFNIFVLTGCS
Inside 27-170 SSEQKKSPPYQLIFRATNNVNDSAPLKIHVILLKSTSEFMSADFFSLQGHAQAVLGNKLINSEQLFLLPFQHKYFLLEKNIPEANSIGIFAEYKQLDGKKWRIALPVPIPEPPAFYKFWTSPPDTLDICIQVTANGLNFIDKCN



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9825 pos: 24-25. LTG-CS. MMVILFLHVLVFNLIIFNIFVLTG



  Protein sequence: 171 a.a.    

>T6CP003921 NC_013892:c2072368-2071856 [Xenorhabdus bovienii SS-2004] [TssJ]
MMVILFLHVLVFNLIIFNIFVLTGCSSSEQKKSPPYQLIFRATNNVNDSAPLKIHVILLKSTSEFMSADFFSLQGHAQAV
LGNKLINSEQLFLLPFQHKYFLLEKNIPEANSIGIFAEYKQLDGKKWRIALPVPIPEPPAFYKFWTSPPDTLDICIQVTA
NGLNFIDKCN*

  Nucleotide sequence: 513 bp    

>T6CP003921 NC_013892:c2072368-2071856 [Xenorhabdus bovienii SS-2004] [TssJ]
ATGATGGTAATACTGTTTCTTCACGTACTCGTATTTAATTTAATAATATTTAACATCTTCGTATTAACAGGGTGTTCATC
ATCCGAGCAGAAAAAATCGCCCCCTTATCAATTGATTTTTCGTGCCACAAATAATGTGAATGACTCAGCTCCGCTGAAAA
TACACGTTATTTTGTTGAAATCGACTTCAGAGTTTATGTCTGCTGATTTTTTTTCACTGCAAGGTCATGCTCAGGCTGTA
CTGGGTAATAAATTGATTAATTCTGAGCAACTTTTTTTACTGCCTTTTCAGCACAAATATTTCTTGTTGGAAAAAAACAT
ACCAGAAGCCAATTCTATCGGCATTTTTGCTGAATATAAGCAATTGGATGGGAAAAAATGGCGTATCGCATTACCGGTTC
CCATTCCTGAGCCTCCCGCTTTCTATAAATTTTGGACATCACCGCCAGACACATTAGATATATGCATTCAAGTCACCGCC
AATGGCCTAAATTTCATCGATAAATGCAATTAA