Detailed information of component protein


Summary

Component ID T6CP003920
Component protein type TssK
T6SS ID (Type) T6SS00382 experimental (Type i3)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (448 a.a.); Nucleotide sequence (1344 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS08965
Coordinate (Strand) 2070486..2071829 (-)
NCBI ID WP_012988559.1
RefSeq NC_013892
Uniprot ID D3V3B8_XENBS
KEGG ID xbo:XBJ1_2107
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.4e-140 19..441
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-447 MSRSEKVIWTEGMFLRPHHFQQAENYLETYVRDWGMAQRPYYWGFLTLKLDQSLLEQGKVMVASASGIFPDGTPFNFTEAHAPVPLQLAENQTGENVVLALPIFRGGREEIIFQERKDSMARFVSVDAEVNDFNAMSVGSTTVQFGRMRLRLMLESDLTPEWTSLSIVHVISRTRDNKLLLDSRFIPPLLNCHAHPQLVSFINDLQGLLEQRRQQTSQCLLQLGQQNSSEIMYFLFLSLVNRYSGQVSHTRNIPLLHPERLFSEWLQFATELASFSQSRIPEDKLPIYDHDNLQVCFNHLMFLLRQGLSIILEEHALQLPLTEYSHGLNVATLTDANMLNTFSFVLAVYADTPKETLISRFPAQMKIAPVGRIRELVQLQLPGIPISAMPSVPRQIPWHSGCLYFELEKEGELWSQMAKSGGFALHLAGEFPGLHMEFWAVRNQSKS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9963 - -


  Protein sequence: 448 a.a.    

>T6CP003920 NC_013892:c2071829-2070486 [Xenorhabdus bovienii SS-2004] [TssK]
MSRSEKVIWTEGMFLRPHHFQQAENYLETYVRDWGMAQRPYYWGFLTLKLDQSLLEQGKVMVASASGIFPDGTPFNFTEA
HAPVPLQLAENQTGENVVLALPIFRGGREEIIFQERKDSMARFVSVDAEVNDFNAMSVGSTTVQFGRMRLRLMLESDLTP
EWTSLSIVHVISRTRDNKLLLDSRFIPPLLNCHAHPQLVSFINDLQGLLEQRRQQTSQCLLQLGQQNSSEIMYFLFLSLV
NRYSGQVSHTRNIPLLHPERLFSEWLQFATELASFSQSRIPEDKLPIYDHDNLQVCFNHLMFLLRQGLSIILEEHALQLP
LTEYSHGLNVATLTDANMLNTFSFVLAVYADTPKETLISRFPAQMKIAPVGRIRELVQLQLPGIPISAMPSVPRQIPWHS
GCLYFELEKEGELWSQMAKSGGFALHLAGEFPGLHMEFWAVRNQSKS*

  Nucleotide sequence: 1344 bp    

>T6CP003920 NC_013892:c2071829-2070486 [Xenorhabdus bovienii SS-2004] [TssK]
ATGAGCAGATCAGAAAAAGTTATCTGGACAGAAGGCATGTTCTTACGCCCTCACCACTTTCAACAGGCCGAAAACTATCT
GGAGACTTATGTCCGCGATTGGGGTATGGCTCAAAGGCCATATTACTGGGGCTTTTTAACGTTAAAGTTAGATCAATCAT
TACTCGAACAGGGCAAGGTCATGGTTGCATCAGCCAGTGGAATTTTTCCTGACGGGACACCCTTTAATTTTACCGAGGCG
CACGCCCCTGTTCCATTACAACTTGCAGAAAATCAAACTGGAGAAAATGTCGTATTGGCACTGCCGATCTTTCGCGGAGG
AAGGGAAGAGATCATTTTTCAGGAAAGAAAAGACTCTATGGCACGTTTTGTCAGCGTTGACGCCGAGGTCAATGATTTTA
ATGCCATGTCAGTCGGAAGTACCACCGTGCAATTTGGCAGAATGCGCCTGCGGCTGATGTTGGAATCAGATCTGACTCCG
GAATGGACGTCACTCAGTATTGTGCATGTTATCAGTAGAACCCGTGATAATAAATTGCTCCTTGATTCACGCTTCATTCC
GCCCTTACTCAACTGCCATGCACATCCACAACTTGTCAGTTTTATTAATGATTTACAGGGATTACTGGAGCAACGCCGCC
AACAGACAAGCCAGTGTTTGTTACAATTGGGGCAACAAAATAGTTCGGAAATCATGTATTTTCTTTTCTTGTCATTAGTC
AATCGTTATAGCGGCCAAGTGAGCCATACCCGGAATATTCCCTTACTGCATCCAGAACGGTTATTCAGTGAATGGCTGCA
ATTTGCCACCGAACTGGCAAGTTTTTCCCAATCACGAATACCAGAAGATAAACTTCCGATTTATGACCATGACAATTTGC
AAGTCTGTTTCAACCACCTCATGTTTTTATTACGCCAAGGGTTATCCATTATTCTGGAAGAACACGCTCTCCAGTTGCCT
TTGACTGAGTATTCTCATGGGCTGAATGTGGCGACCTTAACTGACGCCAATATGCTAAATACATTCAGCTTTGTATTGGC
CGTTTATGCCGATACGCCGAAAGAAACACTCATCTCCCGTTTTCCGGCACAGATGAAAATTGCCCCTGTTGGCCGCATAC
GTGAACTGGTTCAGTTACAGTTACCCGGTATCCCGATCAGTGCAATGCCATCCGTTCCCAGACAAATTCCCTGGCATTCC
GGTTGCCTCTATTTTGAGTTAGAAAAAGAGGGTGAACTCTGGAGCCAGATGGCAAAATCCGGTGGTTTTGCGTTACATCT
GGCAGGTGAATTTCCGGGTCTGCACATGGAATTTTGGGCTGTTAGAAATCAGTCCAAAAGTTGA