Detailed information of component protein


Summary

Component ID T6CP003919
Component protein type TssL
T6SS ID (Type) T6SS00382 experimental (Type i3)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (404 a.a.); Nucleotide sequence (1212 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS08960
Coordinate (Strand) 2069231..2070442 (-)
NCBI ID WP_012988558.1
RefSeq NC_013892
Uniprot ID D3V3B7_XENBS
KEGG ID xbo:XBJ1_2106
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
DotU PF09850.11 2.4e-65 20..222
OmpA PF00691.22 2e-13 290..388
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-199 MTPNTPNRHTELSGDIWDNPLVTAANPLLNSIPQIRHDTESPDPTVLRRKLIDEIRHFELKCQYAKLPYEVIIGARYCLCTTLDEAAALTPWGVRSVWSGSGLLVTFHNETWGGEKLFQLLATLSQSPQKNLLLLELINFCLQLGFEGRYRVMDNGRTQLETLKQRLFQLIYSVRGNYPPELSPALQKIVAPNSPCQSS
Transmembrane helix 200-222 FPVWSFIAMTCLIACILYIGLNW
Outside 223-403 QLDNITSPILTKIYQVNLPNMSVDDHVSSFLPPVLNLQDMLRRESAAGLLNVTNLADRSIVTLRGDGLFNTGSTQIKNNELPVIKHIAETINNIKGEILVIGYTDDVPINSSGFSSNYALSLARAKSVKREFEKYLDHPERVRTEGRGESDPLFPNDTPSHRAKNRRVEIVLLISPTHQTT


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9881 - -


  Protein sequence: 404 a.a.    

>T6CP003919 NC_013892:c2070442-2069231 [Xenorhabdus bovienii SS-2004] [TssL]
MTPNTPNRHTELSGDIWDNPLVTAANPLLNSIPQIRHDTESPDPTVLRRKLIDEIRHFELKCQYAKLPYEVIIGARYCLC
TTLDEAAALTPWGVRSVWSGSGLLVTFHNETWGGEKLFQLLATLSQSPQKNLLLLELINFCLQLGFEGRYRVMDNGRTQL
ETLKQRLFQLIYSVRGNYPPELSPALQKIVAPNSPCQSSFPVWSFIAMTCLIACILYIGLNWQLDNITSPILTKIYQVNL
PNMSVDDHVSSFLPPVLNLQDMLRRESAAGLLNVTNLADRSIVTLRGDGLFNTGSTQIKNNELPVIKHIAETINNIKGEI
LVIGYTDDVPINSSGFSSNYALSLARAKSVKREFEKYLDHPERVRTEGRGESDPLFPNDTPSHRAKNRRVEIVLLISPTH
QTT*

  Nucleotide sequence: 1212 bp    

>T6CP003919 NC_013892:c2070442-2069231 [Xenorhabdus bovienii SS-2004] [TssL]
ATGACTCCAAACACTCCCAACAGGCATACGGAGCTTTCTGGCGACATTTGGGATAATCCATTAGTCACTGCCGCTAACCC
TCTATTAAATAGCATTCCTCAGATCCGCCATGATACCGAGTCCCCGGATCCAACCGTTCTACGGCGAAAACTGATCGATG
AAATTCGCCACTTTGAACTGAAATGCCAATATGCCAAATTGCCTTATGAAGTCATTATCGGTGCACGTTACTGTCTGTGC
ACCACATTGGATGAAGCGGCAGCACTGACTCCGTGGGGCGTTCGCAGTGTCTGGTCCGGCAGTGGATTGCTGGTCACGTT
TCACAACGAAACGTGGGGAGGGGAAAAACTTTTCCAGTTATTAGCGACGTTATCCCAAAGTCCCCAAAAAAATCTGTTGT
TGTTAGAACTCATTAACTTTTGTCTCCAGCTTGGGTTTGAAGGGCGTTATCGTGTCATGGATAATGGGCGAACCCAGTTG
GAAACCTTGAAACAGCGCCTGTTCCAGTTAATTTATTCCGTTCGTGGCAATTATCCGCCTGAATTATCACCAGCATTGCA
AAAAATCGTCGCGCCAAATAGCCCCTGCCAATCTTCCTTCCCTGTTTGGTCCTTTATCGCTATGACCTGTCTTATTGCAT
GTATTCTGTATATCGGACTGAATTGGCAGTTGGATAATATAACCAGCCCAATATTGACGAAAATATATCAAGTCAATTTG
CCCAATATGTCCGTTGATGATCACGTTTCTTCTTTCCTGCCGCCGGTCTTAAATTTACAGGATATGCTCAGACGTGAAAG
TGCTGCGGGATTATTAAATGTAACGAATTTAGCGGATAGAAGTATCGTCACATTAAGAGGCGATGGTTTGTTCAATACGG
GTTCCACTCAAATTAAAAACAATGAACTTCCCGTCATCAAACATATTGCTGAGACAATAAACAACATCAAGGGGGAAATT
TTAGTTATTGGTTATACCGATGATGTTCCCATTAATAGCTCCGGCTTCTCATCCAATTATGCCTTATCACTCGCCAGAGC
CAAATCAGTAAAAAGGGAATTCGAAAAATATCTGGATCACCCTGAACGGGTAAGAACAGAAGGAAGAGGAGAAAGTGATC
CCCTATTTCCAAACGATACGCCCAGTCATCGAGCTAAAAACAGACGGGTTGAAATCGTTCTGTTAATTTCCCCTACACAT
CAGACAACGTGA