Detailed information of component protein


Summary

Component ID T6CP003918
Component protein type TssM
T6SS ID (Type) T6SS00382 experimental (Type i3)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (1172 a.a.); Nucleotide sequence (3516 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS08955
Coordinate (Strand) 2065703..2069218 (-)
NCBI ID WP_012988557.1
RefSeq NC_013892
Uniprot ID D3V3B6_XENBS
KEGG ID xbo:XBJ1_2105
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 4.7e-69 207..437
IcmF-related PF06761.14 2e-68 490..794
IcmF_C PF06744.14 1.1e-21 1046..1150
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-12 MLSAIVAIFTSR
Transmembrane helix 13-32 LMWSFLGITAISSIIWFIGP
Outside 33-46 MTSIGNTIPLGSST
Transmembrane helix 47-69 VRIIIIAILYFVWLFIQLASHLY
Inside 70-428 QVWLNKKLSAPLNRGNDEGEQVRNSQYSPLSEHFSDALRLLKNAYFYGSEIQYKPKWKPFFDRRYRYQLPWYVLIGPPNSGKTTLLANSGLHFPLSDHFETLSSNEIKETDNCHWWFTNQAVLLDTPGRYTTQDTRHEQDAREWKCFVNLLKKYRTRQPLNGVILTISVADLLNPSKKVRDQHAYLLRRRLSELQAQFKIQFPIYVIITKIDLLKGFGAYFAHFDKTQRDQIWGFNFPWNKTGWDLKDIFAQQYGLLQTRLNAELSHILLHLNDLQQCAESYLFPQEFAALQPLIAQHLEIAFAKSGFDIPYSPRGLYFTSSVQEEPIHQGYFLKTLLETLFQEAGLAGQNRWWVYRNR
Transmembrane helix 429-451 LLKGLGYIILAAIMGLIITLFFS
Outside 452-1171 SYGNNKNYLTEVQNKIFPILSQSAALKKISNDIDIYALLPILNKVADLGKSKYFSPDAPPWSYQMGLYHGEQINDASLTLYTKTLQTLLLPQVARLITSQLHQTNSDNIYNTYNTLKAYQMLCQPQHYDGKFLHRWVMQYLQAHLPPTISPTQLHQIEGHLRQLLEYQIVTFPYVCDNPLIKQKQILLSKIPLAQLVYIHLKQELSDNPNLSPVGLTTLAGPEAGLVFSRINGTPITLNIAGMFTPAGYQMGIGNNLTTLIDKLYSQNAWILGQYAEISTPRELTLLVRQFYLHDYLEQWDKFLFDIRLNNIDSLEQRSNIAQFLASNASPMRNLLINISKNVNLDERLSDNHFDKKIGELVSRKADSLTKVVPNPFMSGDNLPTPEQELRKHFAQITALANNPDGKNKQIPFDHVLSQLAKLHEYLDSVQNATNIGIPAPSDEIITQLQATAERLPIPFKGIISSLAMGANSDTQASNVKNLNKQLNTEVQGFCHQAIANRYPLTPWALDDIRPDDMARMFAPQTGIMDSFFQKNLVGKVDTSHENWRLILGTDSKAKALPESHKLLLPFQQAQIIRDTLFSDGSRIPSFRVIVRTVNMDKEILSMILDVDGQQLQYSHGPQVSQSLNWPGPNGSNQARIQLNLDDGTTASLITSGPWALNRLIDHEQFAAGKPATNNHTSQRVTFNIRGHHVSLEFIPNSILSPFQLPIFVCPKLINS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9814 - -


  Protein sequence: 1172 a.a.    

>T6CP003918 NC_013892:c2069218-2065703 [Xenorhabdus bovienii SS-2004] [TssM]
MLSAIVAIFTSRLMWSFLGITAISSIIWFIGPMTSIGNTIPLGSSTVRIIIIAILYFVWLFIQLASHLYQVWLNKKLSAP
LNRGNDEGEQVRNSQYSPLSEHFSDALRLLKNAYFYGSEIQYKPKWKPFFDRRYRYQLPWYVLIGPPNSGKTTLLANSGL
HFPLSDHFETLSSNEIKETDNCHWWFTNQAVLLDTPGRYTTQDTRHEQDAREWKCFVNLLKKYRTRQPLNGVILTISVAD
LLNPSKKVRDQHAYLLRRRLSELQAQFKIQFPIYVIITKIDLLKGFGAYFAHFDKTQRDQIWGFNFPWNKTGWDLKDIFA
QQYGLLQTRLNAELSHILLHLNDLQQCAESYLFPQEFAALQPLIAQHLEIAFAKSGFDIPYSPRGLYFTSSVQEEPIHQG
YFLKTLLETLFQEAGLAGQNRWWVYRNRLLKGLGYIILAAIMGLIITLFFSSYGNNKNYLTEVQNKIFPILSQSAALKKI
SNDIDIYALLPILNKVADLGKSKYFSPDAPPWSYQMGLYHGEQINDASLTLYTKTLQTLLLPQVARLITSQLHQTNSDNI
YNTYNTLKAYQMLCQPQHYDGKFLHRWVMQYLQAHLPPTISPTQLHQIEGHLRQLLEYQIVTFPYVCDNPLIKQKQILLS
KIPLAQLVYIHLKQELSDNPNLSPVGLTTLAGPEAGLVFSRINGTPITLNIAGMFTPAGYQMGIGNNLTTLIDKLYSQNA
WILGQYAEISTPRELTLLVRQFYLHDYLEQWDKFLFDIRLNNIDSLEQRSNIAQFLASNASPMRNLLINISKNVNLDERL
SDNHFDKKIGELVSRKADSLTKVVPNPFMSGDNLPTPEQELRKHFAQITALANNPDGKNKQIPFDHVLSQLAKLHEYLDS
VQNATNIGIPAPSDEIITQLQATAERLPIPFKGIISSLAMGANSDTQASNVKNLNKQLNTEVQGFCHQAIANRYPLTPWA
LDDIRPDDMARMFAPQTGIMDSFFQKNLVGKVDTSHENWRLILGTDSKAKALPESHKLLLPFQQAQIIRDTLFSDGSRIP
SFRVIVRTVNMDKEILSMILDVDGQQLQYSHGPQVSQSLNWPGPNGSNQARIQLNLDDGTTASLITSGPWALNRLIDHEQ
FAAGKPATNNHTSQRVTFNIRGHHVSLEFIPNSILSPFQLPIFVCPKLINS*

  Nucleotide sequence: 3516 bp    

>T6CP003918 NC_013892:c2069218-2065703 [Xenorhabdus bovienii SS-2004] [TssM]
ATGTTGAGCGCCATTGTTGCTATTTTTACCAGCCGATTAATGTGGAGTTTCCTCGGCATCACCGCCATCTCTTCCATTAT
CTGGTTTATTGGTCCCATGACTTCTATCGGTAATACCATACCTCTTGGATCAAGTACGGTACGAATAATTATCATTGCCA
TATTATATTTTGTCTGGCTCTTTATCCAGTTAGCGTCTCACTTATATCAGGTTTGGCTGAATAAAAAACTTTCTGCCCCA
TTAAACAGAGGCAATGACGAGGGTGAACAAGTACGAAATTCACAATATTCCCCTTTATCAGAACACTTTTCTGATGCCTT
ACGACTACTGAAAAATGCCTATTTTTATGGTTCAGAGATCCAATATAAGCCAAAATGGAAACCTTTTTTCGATCGTCGAT
ATCGGTATCAGTTACCTTGGTATGTCCTGATTGGCCCCCCCAATTCAGGGAAAACAACCCTTCTGGCAAATTCTGGTTTG
CACTTTCCATTATCCGATCATTTCGAAACGCTTTCCTCAAACGAGATAAAAGAAACCGATAATTGTCACTGGTGGTTCAC
CAATCAGGCTGTCTTACTGGATACACCCGGACGATATACCACTCAGGATACACGGCACGAACAAGATGCCCGTGAATGGA
AATGTTTTGTCAATTTGCTGAAAAAATATCGCACACGCCAGCCCCTAAATGGCGTCATTCTTACCATTAGCGTAGCGGAT
TTATTAAACCCCTCAAAGAAAGTACGTGATCAACACGCTTATTTATTACGCAGGCGATTGTCAGAATTACAGGCTCAGTT
CAAGATCCAATTTCCAATCTATGTCATCATTACCAAGATTGATTTACTGAAAGGATTTGGGGCTTATTTTGCCCATTTTG
ACAAAACACAGCGCGATCAAATCTGGGGATTCAATTTCCCGTGGAACAAAACAGGCTGGGATCTGAAGGACATTTTTGCA
CAGCAATATGGGTTGTTGCAGACACGATTAAATGCAGAGCTATCCCATATTTTATTGCACCTGAATGATCTTCAGCAATG
TGCTGAAAGTTACCTGTTTCCGCAAGAATTTGCCGCACTGCAACCCTTAATTGCTCAGCATCTTGAAATTGCATTCGCTA
AATCAGGGTTTGATATTCCTTATTCACCACGTGGGCTTTATTTCACTAGCAGCGTACAGGAAGAGCCTATTCATCAAGGA
TATTTTCTGAAAACTCTGCTGGAAACGCTCTTTCAGGAAGCGGGGCTTGCCGGTCAAAATCGTTGGTGGGTGTACAGAAA
CCGTCTATTAAAAGGGCTGGGGTATATTATTCTGGCTGCGATCATGGGGTTAATCATCACCTTGTTTTTTAGCAGTTATG
GCAACAATAAAAATTACCTGACAGAAGTTCAAAATAAAATTTTCCCTATTCTGAGCCAAAGTGCAGCATTAAAAAAGATC
AGCAACGACATCGATATTTATGCCTTACTGCCTATTTTGAATAAAGTGGCGGATTTGGGAAAAAGTAAATATTTTTCTCC
TGATGCTCCCCCTTGGTCATACCAAATGGGCTTGTATCATGGTGAACAGATCAATGATGCCAGTTTGACTCTGTACACGA
AAACATTACAAACCTTATTGCTACCGCAAGTCGCACGGTTAATAACGTCTCAATTGCACCAAACCAACAGCGATAATATA
TATAACACTTACAATACGTTGAAAGCGTATCAAATGTTATGTCAGCCCCAACATTATGACGGTAAGTTCTTACATCGTTG
GGTGATGCAATATTTGCAGGCTCATTTACCCCCCACTATTTCACCGACACAATTACACCAAATTGAGGGGCATCTGCGCC
AATTATTGGAATATCAGATCGTTACTTTCCCTTATGTTTGTGATAACCCACTGATAAAACAAAAACAGATTTTACTTAGC
AAGATCCCACTAGCACAACTCGTTTATATCCATTTAAAACAGGAACTATCGGATAACCCCAATTTATCGCCAGTCGGCTT
AACAACGCTTGCTGGCCCAGAAGCCGGATTGGTTTTCTCACGCATCAACGGTACACCGATTACCCTTAATATAGCGGGGA
TGTTTACTCCGGCGGGGTATCAAATGGGGATAGGTAACAATCTCACTACCCTCATCGATAAGTTATACAGTCAAAATGCA
TGGATACTGGGCCAGTATGCAGAAATATCAACCCCAAGAGAGCTTACCCTCTTAGTACGACAATTTTATCTCCATGATTA
TCTTGAACAATGGGATAAATTTCTGTTCGACATCCGTCTAAACAATATTGACAGCCTGGAGCAGCGTTCTAATATAGCCC
AGTTTCTGGCTTCAAATGCTTCTCCCATGCGCAATCTGCTCATTAATATCAGTAAGAATGTCAATCTGGATGAAAGGTTA
AGCGATAACCATTTTGATAAAAAAATCGGTGAGTTGGTCAGCCGTAAAGCAGATTCATTGACAAAAGTCGTACCTAATCC
ATTCATGTCAGGAGATAACCTCCCCACCCCGGAACAAGAATTGAGAAAACATTTTGCCCAAATTACTGCATTGGCAAACA
ATCCAGACGGTAAAAATAAGCAAATTCCTTTTGATCATGTTCTCAGTCAACTTGCCAAATTACACGAATATCTGGATTCA
GTACAAAATGCTACCAATATAGGCATACCCGCGCCATCGGATGAAATTATCACCCAACTCCAAGCCACGGCGGAGCGGTT
GCCGATCCCATTCAAGGGCATCATTTCCTCGTTGGCAATGGGGGCTAACAGTGATACACAAGCCAGTAACGTAAAGAATC
TCAATAAGCAGCTGAATACAGAAGTCCAAGGCTTTTGTCATCAAGCGATTGCCAACCGCTATCCGCTGACGCCGTGGGCA
CTTGATGATATCAGACCGGATGATATGGCTCGGATGTTTGCGCCACAAACGGGGATCATGGATAGCTTTTTCCAAAAAAA
TCTGGTGGGAAAAGTCGATACATCTCACGAAAACTGGCGCCTTATACTGGGAACGGATAGCAAAGCAAAAGCATTACCGG
AAAGTCACAAGTTACTCCTGCCATTCCAACAAGCCCAGATCATTCGAGATACTTTATTCAGCGACGGCTCGCGTATCCCT
TCATTTCGGGTCATCGTCCGCACCGTAAATATGGATAAAGAGATATTGAGTATGATACTGGATGTTGATGGTCAGCAATT
GCAATATAGCCACGGCCCACAAGTTTCGCAGTCACTCAATTGGCCTGGCCCAAACGGCTCCAATCAGGCTCGTATCCAAT
TAAATTTAGATGATGGGACAACAGCGAGTCTCATCACTTCCGGCCCGTGGGCATTAAATCGCTTAATTGACCATGAACAA
TTCGCGGCAGGAAAACCCGCCACAAATAATCATACAAGCCAGCGTGTGACATTTAATATCAGAGGCCATCATGTCTCATT
GGAATTTATTCCAAACAGTATTCTCAGCCCGTTTCAACTTCCCATTTTCGTCTGTCCCAAGCTGATTAATTCATAA