Detailed information of component protein
Summary
| Component ID | T6CP003916 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00382  (Type i3) |
| Strain | Xenorhabdus bovienii SS-2004 |
| Replicon | chromosome |
| Sequence | Protein sequence (184 a.a.); Nucleotide sequence (552 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XBJ1_RS08945 |
| Coordinate (Strand) | 2063743..2064294 (-) |
| NCBI ID | WP_012988555.1 |
| RefSeq | NC_013892 |
| Uniprot ID | D3V3B4_XENBS |
| KEGG ID | xbo:XBJ1_2103 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 4.1e-56 | 12..160 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-183 | MKSSGQKFIALNRPPRVQIEYDVELYGSEQKIQLPFVMGVMSDLTGKTLEALPEVNDRKFMEIDLDNFDERMKSTQPRVAFQVDNTLTHDGKLNVELIFEKMEDFQPDVIAKKVEPLAKLLEARTQLANLLSYMDGKSGAEQLIADILQNPALLKSLADAPKPTEGVADTESITDTEEAENKE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9958 | - | - |
Protein sequence: 184 a.a.
>T6CP003916 NC_013892:c2064294-2063743 [Xenorhabdus bovienii SS-2004] [TssB]
MKSSGQKFIALNRPPRVQIEYDVELYGSEQKIQLPFVMGVMSDLTGKTLEALPEVNDRKFMEIDLDNFDERMKSTQPRVA
FQVDNTLTHDGKLNVELIFEKMEDFQPDVIAKKVEPLAKLLEARTQLANLLSYMDGKSGAEQLIADILQNPALLKSLADA
PKPTEGVADTESITDTEEAENKE*
MKSSGQKFIALNRPPRVQIEYDVELYGSEQKIQLPFVMGVMSDLTGKTLEALPEVNDRKFMEIDLDNFDERMKSTQPRVA
FQVDNTLTHDGKLNVELIFEKMEDFQPDVIAKKVEPLAKLLEARTQLANLLSYMDGKSGAEQLIADILQNPALLKSLADA
PKPTEGVADTESITDTEEAENKE*
Nucleotide sequence: 552 bp
>T6CP003916 NC_013892:c2064294-2063743 [Xenorhabdus bovienii SS-2004] [TssB]
ATGAAATCCAGTGGACAAAAGTTTATTGCTCTAAATCGTCCTCCGCGCGTACAGATTGAATATGATGTCGAGCTTTATGG
TTCAGAACAAAAAATTCAATTGCCGTTTGTTATGGGGGTGATGAGCGACTTAACAGGAAAAACATTAGAGGCTCTACCGG
AAGTGAATGACCGCAAATTCATGGAAATTGATCTTGATAATTTTGATGAACGCATGAAATCAACACAGCCCCGTGTTGCT
TTCCAGGTGGACAATACACTAACCCATGATGGGAAACTGAATGTCGAATTAATTTTTGAAAAAATGGAAGATTTTCAGCC
TGATGTGATTGCTAAAAAAGTGGAACCCCTAGCTAAGTTACTGGAGGCGCGAACCCAACTGGCAAACCTATTATCCTATA
TGGATGGCAAAAGCGGCGCAGAACAATTGATCGCCGATATCCTGCAAAATCCTGCTCTGCTGAAATCACTGGCCGATGCA
CCAAAACCCACCGAAGGTGTTGCTGATACTGAGAGTATCACCGACACAGAAGAGGCTGAAAATAAGGAGTAA
ATGAAATCCAGTGGACAAAAGTTTATTGCTCTAAATCGTCCTCCGCGCGTACAGATTGAATATGATGTCGAGCTTTATGG
TTCAGAACAAAAAATTCAATTGCCGTTTGTTATGGGGGTGATGAGCGACTTAACAGGAAAAACATTAGAGGCTCTACCGG
AAGTGAATGACCGCAAATTCATGGAAATTGATCTTGATAATTTTGATGAACGCATGAAATCAACACAGCCCCGTGTTGCT
TTCCAGGTGGACAATACACTAACCCATGATGGGAAACTGAATGTCGAATTAATTTTTGAAAAAATGGAAGATTTTCAGCC
TGATGTGATTGCTAAAAAAGTGGAACCCCTAGCTAAGTTACTGGAGGCGCGAACCCAACTGGCAAACCTATTATCCTATA
TGGATGGCAAAAGCGGCGCAGAACAATTGATCGCCGATATCCTGCAAAATCCTGCTCTGCTGAAATCACTGGCCGATGCA
CCAAAACCCACCGAAGGTGTTGCTGATACTGAGAGTATCACCGACACAGAAGAGGCTGAAAATAAGGAGTAA