Detailed information of component protein


Summary

Component ID T6CP003915
Component protein type TssC
T6SS ID (Type) T6SS00382 experimental (Type i3)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (501 a.a.); Nucleotide sequence (1503 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS08940
Coordinate (Strand) 2062237..2063739 (-)
NCBI ID WP_012988554.1
RefSeq NC_013892
Uniprot ID D3V3B3_XENBS
KEGG ID xbo:XBJ1_2102
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.3e-134 71..373
VipB_2 PF18945.2 9.2e-44 383..494
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-500 MSTTEQETEFQQEQLSKEYTPDELSVLLNKEFRPQSDQARSAVESAVTTLAQQALENTVTISGDTYRTIQALITEIDKKLSQQINHILHHDEFQALEGAWRGLHYLVNNTETDEMLKIRVMCISKKELGSTLKRFKGVSWDQSPVFKKIYEAEYGQFGGEPYGCLIGDYYFDHTAPDVELLREMAQISAAAHCPFLSGASPSVMQMECWQELSNPRDLTKVFQNTEYAPWHSLRESEDVRYLGLTLPRFLSRLPYGNKTNPVDNFNFEEDTEGPTHSNYTWANAAYAMAVNINRSFKLYGWCTSIHGVESGGTVENLPCYTFPTDDGGVDIKCPTEIAISDRREAELAKNGFIPLLHRKNTDMAAFIGAQSLQKPSEYYDHDATANANLSARLPYLFACCRFAHYLKCIVRDKIGTFQERNDMENWLNNWIINYVDGDPTNSSAGTKARKPLAAAEVQVEEIPSNPGYYHAKFFLRPHYQLEGLTVSLRLVSRLPSLKST


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9372 - -


  Protein sequence: 501 a.a.    

>T6CP003915 NC_013892:c2063739-2062237 [Xenorhabdus bovienii SS-2004] [TssC]
MSTTEQETEFQQEQLSKEYTPDELSVLLNKEFRPQSDQARSAVESAVTTLAQQALENTVTISGDTYRTIQALITEIDKKL
SQQINHILHHDEFQALEGAWRGLHYLVNNTETDEMLKIRVMCISKKELGSTLKRFKGVSWDQSPVFKKIYEAEYGQFGGE
PYGCLIGDYYFDHTAPDVELLREMAQISAAAHCPFLSGASPSVMQMECWQELSNPRDLTKVFQNTEYAPWHSLRESEDVR
YLGLTLPRFLSRLPYGNKTNPVDNFNFEEDTEGPTHSNYTWANAAYAMAVNINRSFKLYGWCTSIHGVESGGTVENLPCY
TFPTDDGGVDIKCPTEIAISDRREAELAKNGFIPLLHRKNTDMAAFIGAQSLQKPSEYYDHDATANANLSARLPYLFACC
RFAHYLKCIVRDKIGTFQERNDMENWLNNWIINYVDGDPTNSSAGTKARKPLAAAEVQVEEIPSNPGYYHAKFFLRPHYQ
LEGLTVSLRLVSRLPSLKST*

  Nucleotide sequence: 1503 bp    

>T6CP003915 NC_013892:c2063739-2062237 [Xenorhabdus bovienii SS-2004] [TssC]
ATGAGTACGACTGAACAAGAAACTGAATTTCAGCAAGAGCAGCTCTCAAAAGAATATACCCCTGATGAACTGAGTGTATT
GCTGAATAAAGAATTTCGTCCACAAAGCGACCAGGCACGAAGCGCTGTGGAAAGTGCTGTGACTACATTGGCACAACAGG
CGCTGGAAAATACGGTCACAATCTCCGGTGATACCTACCGAACCATTCAAGCCCTGATTACTGAGATCGATAAAAAACTA
TCACAGCAAATTAATCATATTTTGCATCATGATGAGTTCCAAGCGTTGGAAGGGGCTTGGCGAGGGTTGCATTATCTCGT
CAATAACACGGAAACCGATGAAATGTTAAAAATCCGTGTTATGTGTATTTCCAAAAAAGAGTTGGGCAGTACGCTAAAAC
GTTTCAAAGGTGTGAGCTGGGATCAAAGCCCTGTCTTTAAAAAAATCTATGAAGCGGAATATGGCCAGTTTGGCGGTGAG
CCTTATGGTTGCCTTATCGGAGATTATTATTTCGATCACACCGCACCCGATGTTGAACTCTTACGGGAGATGGCTCAGAT
TAGTGCCGCCGCGCATTGTCCATTTCTTTCGGGCGCCTCACCAAGTGTGATGCAAATGGAATGCTGGCAAGAGTTATCTA
ATCCACGGGATCTCACCAAAGTTTTCCAAAATACCGAATATGCCCCTTGGCATAGTTTGCGTGAATCGGAAGATGTTCGT
TATCTGGGATTAACTTTACCCCGTTTTCTCTCCCGTCTGCCCTATGGTAATAAAACAAATCCTGTCGATAATTTTAATTT
TGAGGAGGATACCGAAGGCCCTACCCACAGTAACTATACCTGGGCCAATGCAGCTTATGCTATGGCTGTTAATATCAACC
GCTCATTTAAATTATATGGCTGGTGTACTTCTATCCATGGCGTAGAATCCGGTGGTACTGTAGAAAATTTGCCTTGCTAT
ACTTTCCCAACCGATGATGGCGGGGTTGATATCAAATGCCCCACCGAAATCGCCATTAGTGATCGCCGTGAGGCTGAATT
GGCTAAAAATGGTTTTATTCCACTCTTGCATCGTAAAAATACCGATATGGCCGCCTTTATTGGGGCACAATCATTGCAGA
AACCGTCTGAATATTACGACCACGACGCCACCGCTAATGCAAATCTTTCAGCTCGCCTACCTTATTTATTCGCCTGCTGT
CGTTTCGCTCACTATTTAAAATGTATTGTCCGCGATAAAATCGGTACATTTCAGGAACGTAATGATATGGAGAACTGGCT
TAATAACTGGATAATCAATTATGTTGACGGTGATCCGACCAACTCTTCTGCAGGAACCAAAGCACGAAAACCCTTGGCTG
CCGCAGAAGTACAAGTAGAAGAAATCCCAAGTAACCCAGGATATTATCACGCTAAATTTTTCCTACGCCCACATTATCAA
TTAGAAGGATTAACCGTTTCTTTACGTCTGGTATCAAGATTACCTTCATTAAAAAGCACTTAG