Detailed information of component protein


Summary

Component ID T6CP003913
Component protein type TssF
T6SS ID (Type) T6SS00382 experimental (Type i3)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (625 a.a.); Nucleotide sequence (1875 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS08920
Coordinate (Strand) 2057415..2059289 (-)
NCBI ID WP_012988550.1
RefSeq NC_013892
Uniprot ID D3V3A9_XENBS
KEGG ID xbo:XBJ1_2098
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 3.1e-217 1..621
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-624 MDSKLLEYYNRELVYLREMGKEFAERYPKIANRLGMHGIDIADPYVERLIEGFAFLTSRIQLKMDAEFQHFSQHLLEMLYPNYLAPTPSMAITELQPDMSKGDISHGFLVPHGSIMRCQSLENDGITLQYSTTQDVILQPLKLQKVELGKIPANFPLVGLNLHHYGAVSALRIRLACKGKLFLHDLDLNKLTFFLSGPDIQSQKLLELIMEHSVGMVCQTQGASPQYLTLPDIAPHHEGFDDEQALLPNDPRNFSGYRQVQEYFAFPARFRFFSICGMQPLLKETKEDVEFELILLLNKTDSRLESLIDISYLALNCTPVINLFPKMTERLTVDESTNEYHLVVDNTRPLDYEIFSVQRLLGIDAQHKQERIFRPFWSTNSDDPDNYGAYFSLRREPRILSEHAHHYGTRTSYIGTETFISIVDEHHSPWPDTLRYLSADVMCTNRDLPAMLRQKDINSFAMLDSIPISKIEFIKRPTIPRPALAEGAVSWKLISQLQINYMNFMDQNQEEGTQTLRQLLSLYADLAEPAVVRQINGIRHCSLKEVYRRVPDTGLIVFARGVSIKLEVDEQEFAGASPWLLGSVLEKLFSRLVTINAFTEMTLYSQQRGQVGFWPARMGSKKLI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9977 - -


  Protein sequence: 625 a.a.    

>T6CP003913 NC_013892:c2059289-2057415 [Xenorhabdus bovienii SS-2004] [TssF]
MDSKLLEYYNRELVYLREMGKEFAERYPKIANRLGMHGIDIADPYVERLIEGFAFLTSRIQLKMDAEFQHFSQHLLEMLY
PNYLAPTPSMAITELQPDMSKGDISHGFLVPHGSIMRCQSLENDGITLQYSTTQDVILQPLKLQKVELGKIPANFPLVGL
NLHHYGAVSALRIRLACKGKLFLHDLDLNKLTFFLSGPDIQSQKLLELIMEHSVGMVCQTQGASPQYLTLPDIAPHHEGF
DDEQALLPNDPRNFSGYRQVQEYFAFPARFRFFSICGMQPLLKETKEDVEFELILLLNKTDSRLESLIDISYLALNCTPV
INLFPKMTERLTVDESTNEYHLVVDNTRPLDYEIFSVQRLLGIDAQHKQERIFRPFWSTNSDDPDNYGAYFSLRREPRIL
SEHAHHYGTRTSYIGTETFISIVDEHHSPWPDTLRYLSADVMCTNRDLPAMLRQKDINSFAMLDSIPISKIEFIKRPTIP
RPALAEGAVSWKLISQLQINYMNFMDQNQEEGTQTLRQLLSLYADLAEPAVVRQINGIRHCSLKEVYRRVPDTGLIVFAR
GVSIKLEVDEQEFAGASPWLLGSVLEKLFSRLVTINAFTEMTLYSQQRGQVGFWPARMGSKKLI*

  Nucleotide sequence: 1875 bp    

>T6CP003913 NC_013892:c2059289-2057415 [Xenorhabdus bovienii SS-2004] [TssF]
ATGGATAGCAAACTATTGGAATACTATAACCGAGAGTTGGTGTACTTACGTGAAATGGGTAAAGAGTTTGCGGAACGCTA
CCCCAAAATTGCCAATCGATTAGGCATGCATGGCATTGATATCGCCGATCCCTATGTTGAACGCCTGATAGAAGGGTTTG
CTTTCTTGACTTCCCGCATCCAGTTAAAAATGGATGCCGAATTTCAGCATTTTTCCCAGCATTTACTGGAAATGCTCTAT
CCCAATTATCTGGCTCCCACCCCTTCCATGGCCATTACAGAACTCCAACCAGACATGAGTAAGGGAGATATCAGCCACGG
TTTTCTGGTGCCACACGGCTCGATTATGCGCTGCCAGTCTCTGGAGAACGATGGCATTACCTTGCAATATTCCACGACTC
AGGATGTCATCTTACAACCGCTGAAACTACAAAAAGTTGAGCTTGGCAAGATCCCCGCCAATTTTCCTCTGGTGGGTTTA
AACCTTCATCACTATGGTGCAGTCAGTGCATTACGTATCCGCCTTGCCTGTAAGGGAAAGCTCTTTCTCCACGATTTGGA
TCTTAATAAACTGACCTTTTTTCTTTCAGGGCCAGATATTCAATCCCAAAAACTGCTGGAACTGATAATGGAGCACTCGG
TTGGGATGGTATGCCAAACTCAGGGAGCCTCCCCACAATACCTGACATTGCCTGACATTGCTCCACATCATGAAGGTTTT
GATGATGAGCAAGCCCTCTTACCCAATGATCCCCGTAATTTCAGTGGATATCGCCAGGTTCAAGAATATTTTGCCTTTCC
GGCACGTTTTCGATTTTTCAGTATTTGTGGTATGCAACCTTTGCTCAAGGAGACCAAGGAAGACGTTGAATTCGAACTTA
TTCTGCTCTTAAACAAAACCGATAGCCGTTTGGAAAGCCTGATCGATATTTCCTATCTGGCATTGAACTGTACACCTGTG
ATCAATTTATTTCCCAAAATGACCGAGCGATTGACGGTTGATGAAAGTACCAATGAATATCATCTGGTCGTGGATAACAC
CCGTCCATTAGATTACGAAATTTTTTCCGTGCAACGTTTACTCGGTATCGATGCACAACATAAGCAAGAGCGTATATTTC
GTCCTTTTTGGTCAACTAATAGCGATGATCCTGATAATTACGGTGCCTATTTTTCACTGCGCCGGGAGCCACGCATATTG
TCTGAACACGCCCATCATTATGGCACCCGCACGAGCTATATCGGCACAGAAACATTTATCTCTATTGTGGATGAACATCA
CTCTCCGTGGCCTGATACATTAAGGTATCTGAGTGCCGATGTGATGTGTACTAACCGAGATCTACCCGCAATGTTGCGGC
AAAAAGATATCAATAGCTTTGCCATGCTGGACTCCATCCCGATCAGTAAAATTGAGTTTATTAAAAGGCCGACCATCCCT
CGCCCTGCTCTGGCTGAAGGGGCTGTATCATGGAAATTAATCAGCCAGCTTCAAATTAATTACATGAATTTTATGGATCA
AAACCAAGAAGAAGGCACCCAGACGCTACGACAGCTATTAAGTCTCTATGCCGACCTTGCTGAGCCAGCAGTCGTACGCC
AGATTAATGGCATACGACACTGCTCATTAAAAGAAGTCTATCGTAGAGTGCCCGATACTGGCCTTATCGTCTTTGCCCGT
GGTGTCAGCATTAAACTCGAAGTCGATGAGCAGGAGTTTGCCGGCGCCAGCCCGTGGCTTTTAGGCAGTGTGCTGGAAAA
ATTATTCTCGCGTTTGGTCACCATAAACGCCTTTACTGAAATGACACTGTATAGCCAGCAACGTGGACAAGTTGGCTTCT
GGCCTGCCCGCATGGGCAGCAAGAAGTTAATATAA