SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP003912
Component protein type	TssG
T6SS ID (Type)	T6SS00382 (Type i3)
Strain	Xenorhabdus bovienii SS-2004
Replicon	chromosome
Sequence	Protein sequence (359 a.a.); Nucleotide sequence (1077 bp)
Reference	[1] Kochanowsky RM, Bradshaw C, Forlastro I, et al. Xenorhabdus bovienii strain jolietti uses a type 6 secretion system to kill closely related Xenorhabdus strains. FEMS Microbiol Ecol. 2020 Aug 1;96(8). pii: fiaa073. doi: 10.1093/femsec/fiaa073. PMID: 32558899

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	XBJ1_RS08915
Coordinate (Strand)	2056281..2057357 (-)
NCBI ID	WP_012988549.1
RefSeq	NC_013892
Uniprot ID	UPI0001C664B6
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	6.4e-94	25..337

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-358	MKTDITAIHRVCRLPEYFWQQLTQAPWQFDLFQTLRRIDAQAGGYYRLGTAPLPRYEPLRLGQKASMAFAPSTISTVHQLKNSKLYEVLIYSFGLFGPNGPLPLHLTEYTYSREYNYQDPTLGAFTNLFHHRLILLFYRAWANAQPTSSLDRPDNQKFCHYMACLIGMGLSAQQNSNPVNHNHITRNSINNHAHYALSGHLSRQRHNAEGLKKIMLFYFKVPVKIIQNIPQWLQIETQDQARLAAGRHVPCLGKSAILGIAIHDIQHKFRIELGPLTQAEYDMFLPEQTKSQQVREWVYQYLGIEYGWDIRLILDKSDITEMRLSETGKLGLNSWLGKVNKSSHYDDLIYNPKSCKTH

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9889	-	-

Protein sequence: 359 a.a.

						>T6CP003912 NC_013892:c2057357-2056281 [Xenorhabdus bovienii SS-2004] [TssG]
MKTDITAIHRVCRLPEYFWQQLTQAPWQFDLFQTLRRIDAQAGGYYRLGTAPLPRYEPLRLGQKASMAFAPSTISTVHQL
KNSKLYEVLIYSFGLFGPNGPLPLHLTEYTYSREYNYQDPTLGAFTNLFHHRLILLFYRAWANAQPTSSLDRPDNQKFCH
YMACLIGMGLSAQQNSNPVNHNHITRNSINNHAHYALSGHLSRQRHNAEGLKKIMLFYFKVPVKIIQNIPQWLQIETQDQ
ARLAAGRHVPCLGKSAILGIAIHDIQHKFRIELGPLTQAEYDMFLPEQTKSQQVREWVYQYLGIEYGWDIRLILDKSDIT
EMRLSETGKLGLNSWLGKVNKSSHYDDLIYNPKSCKTH*					

Nucleotide sequence: 1077 bp

						>T6CP003912 NC_013892:c2057357-2056281 [Xenorhabdus bovienii SS-2004] [TssG]
ATGAAAACAGATATTACGGCCATTCATCGTGTATGCCGCTTGCCAGAGTATTTTTGGCAACAACTCACCCAAGCCCCCTG
GCAATTTGATCTGTTCCAGACCCTACGTCGCATTGATGCCCAAGCGGGAGGGTATTACCGATTAGGGACAGCCCCATTAC
CACGCTATGAACCTTTGCGCTTGGGACAAAAAGCGTCAATGGCATTCGCACCTTCCACAATTTCCACAGTCCATCAGTTA
AAAAATTCAAAACTCTACGAAGTACTTATTTACAGCTTCGGATTATTTGGTCCCAATGGCCCATTACCTCTGCACCTGAC
TGAATATACCTATTCACGGGAATATAATTATCAAGATCCCACTTTGGGTGCCTTTACCAATCTATTTCACCATCGGCTGA
TACTCCTGTTCTATCGAGCCTGGGCCAATGCACAACCTACCTCATCATTAGATAGACCTGACAACCAGAAGTTTTGTCAT
TATATGGCTTGCCTGATAGGGATGGGATTGTCAGCCCAGCAGAATTCCAACCCGGTCAATCACAATCACATTACCCGTAA
CTCTATTAACAATCATGCCCATTACGCGTTGTCCGGCCATCTTTCCCGCCAGAGGCATAATGCGGAAGGGTTGAAAAAAA
TAATGCTTTTTTATTTCAAGGTTCCCGTAAAAATTATCCAAAATATTCCACAATGGTTGCAGATTGAAACGCAAGATCAG
GCGCGACTGGCAGCAGGACGTCATGTGCCCTGTTTAGGTAAGTCCGCCATTTTGGGCATTGCAATACATGATATTCAACA
TAAATTCCGTATTGAACTAGGGCCATTAACTCAGGCAGAGTACGACATGTTTCTGCCTGAACAGACGAAATCTCAACAAG
TGCGTGAGTGGGTTTATCAATACTTAGGTATCGAGTACGGCTGGGATATTAGGCTGATACTTGATAAATCAGACATCACC
GAAATGCGCCTGTCAGAAACGGGGAAATTGGGACTCAATAGCTGGCTGGGTAAGGTTAACAAATCAAGCCATTATGATGA
CTTAATCTACAACCCTAAATCCTGCAAGACGCATTAA					