Detailed information of component protein


Summary

Component ID T6CP003911
Component protein type TssH
T6SS ID (Type) T6SS00382 experimental (Type i3)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (878 a.a.); Nucleotide sequence (2634 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS08910
Coordinate (Strand) 2053604..2056237 (-)
NCBI ID WP_012988548.1
RefSeq NC_013892
Uniprot ID D3V3A7_XENBS
KEGG ID xbo:XBJ1_2096
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.5e-39 608..774
AAA_lid_9 PF17871.3 1.1e-26 364..456
ClpB_D2-small PF10431.11 3.1e-11 781..854
AAA PF00004.31 3.4e-09 224..356
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-877 MPEISRSVLFGKLNRVLFTSLENATTFCKLRSNPYVELVHWLHQLMQQQDCDLQSVIRYFALDEAKLAKDIITALDRLPRGASAISDLSEHIDSAVERAWVYGSLKFGVDKIRTAHWLIGMLKTFNLYNTLKAISRQFEQVNADTLIDNFNAICGNSSEEPENEPPSHHSQPTKPQSSDSALRQYGQNLTDLARHGDIDPVSGRDEEIRQIVDILMRRRQNNPLLTGEAGVGKTAIIEGLALRIAANEVPPPLQNVQLWLLDIGMLQAGAGIKGEFESRLRRVIDEVQSSPLPIILFIDEIHTLIGAGGQQGTGDAANLLKPVLARGQLRTLGATTWSEYKKYIEKDPALTRRFQVVQIHEPDEAKALLMLRSLVWTLEKHHRVLLLDEAVEAAIRLSHRYIPARQLPDKAVALLDTACARVAISQNAEPPQLENCRHKIDALKIELEIVEREAKMGIGDQQRSNTILNALSLLEEQLIQLENRWQQELSLINRIIHLQTQLYAPSFHQQQHNDPNALHEELIALQQQLKTLQGEIPLIFASVDSNVVSAVVSDWTGVPLGRMVKDEINAVLHLVDTLNQRIIGQYHALELIAKRVRTSRAKLDDPNKPVGVFMLCGPSGVGKTETALALAETLYGGEQNLITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHSDVHEIFFQVFDKGWMEDGEGRHIDFRNTIIILTSNIGADLVSSLCLQQAPLPDPEKLSTALRKPLLHVFPAALLGRLIVIPYYPLSDNVMTSIVHLQLARIKKRLLENHDIVATFDEPMIKYIVGRCTEIESGGRMVDAILTNSLLPQISQLLLSANANGQQYHQLQVSLGQGEFQFQFME


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9945 - -


  Protein sequence: 878 a.a.    

>T6CP003911 NC_013892:c2056237-2053604 [Xenorhabdus bovienii SS-2004] [TssH]
MPEISRSVLFGKLNRVLFTSLENATTFCKLRSNPYVELVHWLHQLMQQQDCDLQSVIRYFALDEAKLAKDIITALDRLPR
GASAISDLSEHIDSAVERAWVYGSLKFGVDKIRTAHWLIGMLKTFNLYNTLKAISRQFEQVNADTLIDNFNAICGNSSEE
PENEPPSHHSQPTKPQSSDSALRQYGQNLTDLARHGDIDPVSGRDEEIRQIVDILMRRRQNNPLLTGEAGVGKTAIIEGL
ALRIAANEVPPPLQNVQLWLLDIGMLQAGAGIKGEFESRLRRVIDEVQSSPLPIILFIDEIHTLIGAGGQQGTGDAANLL
KPVLARGQLRTLGATTWSEYKKYIEKDPALTRRFQVVQIHEPDEAKALLMLRSLVWTLEKHHRVLLLDEAVEAAIRLSHR
YIPARQLPDKAVALLDTACARVAISQNAEPPQLENCRHKIDALKIELEIVEREAKMGIGDQQRSNTILNALSLLEEQLIQ
LENRWQQELSLINRIIHLQTQLYAPSFHQQQHNDPNALHEELIALQQQLKTLQGEIPLIFASVDSNVVSAVVSDWTGVPL
GRMVKDEINAVLHLVDTLNQRIIGQYHALELIAKRVRTSRAKLDDPNKPVGVFMLCGPSGVGKTETALALAETLYGGEQN
LITINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVVLLDEIEKAHSDVHEIFFQVFDKGWMEDGEGRHID
FRNTIIILTSNIGADLVSSLCLQQAPLPDPEKLSTALRKPLLHVFPAALLGRLIVIPYYPLSDNVMTSIVHLQLARIKKR
LLENHDIVATFDEPMIKYIVGRCTEIESGGRMVDAILTNSLLPQISQLLLSANANGQQYHQLQVSLGQGEFQFQFME*

  Nucleotide sequence: 2634 bp    

>T6CP003911 NC_013892:c2056237-2053604 [Xenorhabdus bovienii SS-2004] [TssH]
ATGCCAGAAATCAGCCGTTCTGTACTCTTTGGTAAACTCAATCGTGTACTCTTCACCTCACTGGAAAATGCGACAACTTT
CTGCAAACTACGCAGTAATCCTTATGTCGAGTTAGTCCATTGGCTGCACCAGCTTATGCAGCAACAAGACTGTGATTTAC
AATCGGTTATCCGTTACTTTGCATTAGATGAAGCCAAGCTGGCAAAAGATATTATTACAGCACTGGATCGCCTGCCACGT
GGAGCCAGTGCGATTTCTGATCTTTCCGAACATATTGATAGTGCCGTAGAGCGTGCCTGGGTATATGGATCATTAAAATT
TGGTGTTGACAAGATCCGTACCGCGCACTGGCTGATTGGTATGTTAAAGACTTTCAATCTGTACAATACCCTGAAAGCCA
TTTCCCGACAGTTTGAACAAGTCAATGCAGATACGTTAATAGATAATTTCAACGCCATCTGCGGTAATAGCAGTGAAGAA
CCGGAGAATGAACCACCCTCTCATCATTCCCAACCGACAAAACCACAATCCTCTGACAGTGCCCTGCGGCAATATGGGCA
AAATCTCACTGATCTGGCTCGCCATGGTGATATTGATCCCGTATCAGGACGCGATGAAGAAATACGCCAGATTGTCGATA
TCTTGATGCGCCGCCGCCAAAATAACCCCTTACTGACCGGTGAAGCTGGGGTAGGAAAAACCGCCATCATTGAAGGGCTG
GCATTGCGGATCGCCGCAAATGAGGTACCTCCACCACTGCAAAATGTGCAACTTTGGTTATTGGATATTGGGATGTTACA
AGCCGGGGCGGGAATCAAGGGCGAATTCGAATCCCGCTTGCGCAGAGTGATTGACGAAGTGCAATCCAGCCCCCTTCCGA
TCATTTTATTCATTGATGAAATCCATACATTAATCGGTGCAGGCGGGCAACAGGGAACGGGGGATGCGGCCAATTTACTT
AAGCCCGTACTGGCACGTGGTCAGTTACGAACGCTTGGAGCAACCACCTGGTCTGAATACAAGAAATATATTGAAAAAGA
TCCGGCCCTCACCCGGCGTTTTCAGGTCGTCCAAATTCATGAACCCGATGAAGCCAAGGCACTTTTGATGCTACGCAGTC
TGGTCTGGACGCTGGAAAAACATCACCGTGTTCTCCTACTGGATGAGGCCGTTGAAGCTGCCATACGGCTTTCCCATCGC
TATATTCCCGCTCGTCAGCTACCCGATAAGGCTGTAGCTCTATTAGATACGGCATGCGCCAGAGTTGCCATTAGCCAAAA
CGCTGAACCACCACAGTTGGAAAATTGCCGACATAAAATCGATGCCTTGAAGATTGAGCTAGAAATTGTTGAACGAGAAG
CAAAAATGGGGATAGGCGATCAGCAACGGTCAAATACCATCCTCAATGCGCTATCCCTATTGGAAGAACAACTTATTCAA
TTGGAAAACCGCTGGCAGCAAGAACTCTCCTTGATTAATAGAATTATTCATCTGCAAACTCAACTTTATGCCCCCTCCTT
TCATCAACAACAGCATAATGATCCCAATGCCCTGCATGAAGAGCTAATAGCATTGCAACAACAATTAAAAACGTTACAAG
GAGAGATCCCCCTTATCTTTGCTTCGGTAGACAGCAATGTTGTTTCCGCCGTTGTCTCAGACTGGACGGGGGTTCCTCTT
GGCCGCATGGTAAAAGACGAAATTAATGCGGTATTGCATTTGGTGGATACACTCAACCAACGTATTATCGGGCAGTACCA
TGCTTTAGAGTTGATCGCAAAACGGGTACGAACTTCACGGGCAAAATTGGATGATCCCAATAAACCGGTGGGGGTGTTTA
TGTTATGTGGCCCTTCCGGTGTCGGTAAGACCGAAACCGCGCTGGCATTGGCGGAAACGCTATATGGTGGCGAACAGAAT
CTTATCACCATTAATATGAGTGAATTTCAGGAAGCCCATACGGTATCCACCTTAAAAGGGGCACCACCGGGGTATGTGGG
TTATGGTGAAGGGGGAGTATTGACCGAAGCCGTGCGCCGGCGTCCCTACAGTGTGGTCTTACTGGATGAAATTGAAAAAG
CCCACTCTGATGTCCATGAGATTTTTTTTCAAGTCTTTGACAAGGGTTGGATGGAAGATGGTGAAGGCCGCCACATTGAT
TTTCGCAATACCATTATTATCCTGACATCCAATATTGGGGCTGATTTGGTGAGTTCGCTGTGTTTACAACAGGCTCCTCT
TCCAGATCCAGAAAAACTGAGTACCGCATTGCGAAAACCCTTACTGCACGTATTTCCTGCTGCCTTACTCGGACGTTTGA
TTGTCATTCCTTACTATCCATTGAGTGATAATGTGATGACAAGTATTGTTCACCTGCAATTGGCAAGGATCAAAAAACGT
TTACTGGAAAACCATGACATTGTAGCTACATTTGATGAACCCATGATTAAATATATCGTTGGCCGATGTACAGAAATCGA
ATCAGGTGGCCGTATGGTAGATGCTATCCTGACCAACTCCTTGCTGCCGCAGATCAGCCAGCTCTTGCTCTCTGCTAACG
CGAATGGTCAGCAATATCATCAATTACAAGTCTCTCTCGGACAAGGTGAGTTTCAGTTCCAGTTCATGGAATGA