Detailed information of component protein
Summary
External database links
Locus tag (Gene) | ETAE_RS11300 |
Coordinate (Strand) | 2569522..2570910 (+) |
NCBI ID | WP_012849270.1 |
RefSeq | NC_013508 |
Uniprot ID | D0ZB42_EDWTE, A0A0H3DSL4_EDWTF |
KEGG ID | etd:ETAF_2211, etr:ETAE_2441 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
T6SS_VasE | PF05936.14 | 5.2e-100 | 19..460 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-462 | MKIHKPVYWHQGMFLQPQHFQLADLHSQFQLKPFLDSGLQDFWGVGALTISESALGNQQLNILSAELLFRDHSYVVWPGNTICKPRSFASAWQDQSRPFNVYLGLKKLDTIESNVAVVPQLEDGAGRNVRCVTTQQGDKHADLYSDGPEAEIQSLHYVLQVLWESEVEKLTDYNILPIARLERQGEVVQLSKSFIPPCYIMGGSETLMRVVRDVRDDLAGRARQLEAYKSPREIRKAEFDASFLMFLLALRTLNRYVPLLYQLTESPQVHPRKVYDMLRQIVGELSTFSERCDMLGSSGENSPGLPPYRHQDIAPGLLTVRDLIIRLLNEISIGPDFLIALEPSGEYLTARLPKSLLEDRNRFYLIVRSDMAPDTLQAAFRARARLAEADALPLLIQRALPGITLTPLSSVPEGLPRRSCSFYFQIDTQSEAWRQVAESCHVAFNWFDAPDDLKVELVGVSR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9902 | - | - |
Protein sequence: 463 a.a.
>T6CP003815 NC_013508:2569522-2570910 [Edwardsiella tarda EIB202] [TssK]
MKIHKPVYWHQGMFLQPQHFQLADLHSQFQLKPFLDSGLQDFWGVGALTISESALGNQQLNILSAELLFRDHSYVVWPGN
TICKPRSFASAWQDQSRPFNVYLGLKKLDTIESNVAVVPQLEDGAGRNVRCVTTQQGDKHADLYSDGPEAEIQSLHYVLQ
VLWESEVEKLTDYNILPIARLERQGEVVQLSKSFIPPCYIMGGSETLMRVVRDVRDDLAGRARQLEAYKSPREIRKAEFD
ASFLMFLLALRTLNRYVPLLYQLTESPQVHPRKVYDMLRQIVGELSTFSERCDMLGSSGENSPGLPPYRHQDIAPGLLTV
RDLIIRLLNEISIGPDFLIALEPSGEYLTARLPKSLLEDRNRFYLIVRSDMAPDTLQAAFRARARLAEADALPLLIQRAL
PGITLTPLSSVPEGLPRRSCSFYFQIDTQSEAWRQVAESCHVAFNWFDAPDDLKVELVGVSR*
MKIHKPVYWHQGMFLQPQHFQLADLHSQFQLKPFLDSGLQDFWGVGALTISESALGNQQLNILSAELLFRDHSYVVWPGN
TICKPRSFASAWQDQSRPFNVYLGLKKLDTIESNVAVVPQLEDGAGRNVRCVTTQQGDKHADLYSDGPEAEIQSLHYVLQ
VLWESEVEKLTDYNILPIARLERQGEVVQLSKSFIPPCYIMGGSETLMRVVRDVRDDLAGRARQLEAYKSPREIRKAEFD
ASFLMFLLALRTLNRYVPLLYQLTESPQVHPRKVYDMLRQIVGELSTFSERCDMLGSSGENSPGLPPYRHQDIAPGLLTV
RDLIIRLLNEISIGPDFLIALEPSGEYLTARLPKSLLEDRNRFYLIVRSDMAPDTLQAAFRARARLAEADALPLLIQRAL
PGITLTPLSSVPEGLPRRSCSFYFQIDTQSEAWRQVAESCHVAFNWFDAPDDLKVELVGVSR*
Nucleotide sequence: 1389 bp
>T6CP003815 NC_013508:2569522-2570910 [Edwardsiella tarda EIB202] [TssK]
ATGAAAATTCACAAACCAGTTTATTGGCATCAGGGCATGTTTTTACAGCCGCAGCATTTTCAGCTGGCAGACCTGCATAG
CCAATTTCAGCTCAAGCCATTCTTGGACTCCGGACTGCAGGATTTTTGGGGAGTGGGAGCGCTGACCATTTCGGAGTCAG
CCCTAGGCAACCAGCAGCTCAATATCCTGTCGGCTGAGCTGCTCTTCCGCGACCACAGCTATGTCGTATGGCCGGGCAAT
ACCATCTGTAAGCCGCGCTCCTTCGCCTCTGCCTGGCAGGATCAGAGCCGGCCGTTCAATGTCTACCTGGGGCTGAAAAA
GCTGGACACGATAGAGTCCAATGTGGCCGTCGTGCCACAGCTTGAGGATGGCGCAGGGCGGAACGTCCGCTGCGTGACGA
CCCAGCAGGGAGACAAGCACGCGGACTTATATTCGGATGGGCCTGAAGCCGAGATCCAGAGCCTGCACTACGTGCTGCAG
GTGCTGTGGGAGAGCGAGGTTGAAAAGCTGACGGATTACAATATCCTGCCCATCGCCCGGCTGGAGCGCCAGGGCGAGGT
GGTTCAGCTGTCCAAGAGCTTCATTCCGCCGTGCTACATCATGGGCGGCTCCGAGACCCTGATGCGGGTGGTCCGGGATG
TCCGGGACGATCTGGCGGGGCGCGCCCGCCAACTGGAGGCCTATAAAAGCCCGCGCGAAATCCGCAAGGCGGAGTTCGAT
GCCAGCTTTCTGATGTTTCTGCTGGCCCTGCGCACCCTCAACCGCTACGTGCCGCTGCTGTACCAGCTGACCGAATCGCC
GCAGGTCCATCCGCGCAAGGTCTACGACATGCTGCGGCAGATCGTCGGCGAGCTGTCCACCTTCAGCGAGCGCTGCGACA
TGCTGGGCTCCAGCGGCGAAAACAGCCCGGGGCTCCCCCCCTACCGCCATCAGGACATCGCGCCGGGGCTGTTAACCGTA
CGCGATCTGATTATTCGTTTATTGAATGAAATATCGATCGGACCCGATTTCCTGATCGCCCTGGAGCCGAGCGGGGAGTA
CCTGACGGCGCGGCTCCCCAAGAGCCTGCTGGAAGATCGTAACCGCTTCTACCTGATCGTCCGCAGTGACATGGCGCCGG
ATACCCTGCAGGCCGCCTTCCGGGCCCGCGCCAGGCTGGCCGAGGCCGACGCATTGCCCTTACTGATCCAGCGCGCCTTG
CCGGGGATCACGCTGACGCCGCTATCGTCCGTTCCCGAAGGCTTGCCCCGGCGCTCCTGCTCGTTTTATTTCCAGATCGA
TACCCAAAGTGAAGCCTGGCGGCAGGTCGCCGAGAGTTGCCACGTCGCGTTCAACTGGTTCGATGCCCCAGATGACCTCA
AAGTAGAATTGGTAGGAGTGAGCCGGTGA
ATGAAAATTCACAAACCAGTTTATTGGCATCAGGGCATGTTTTTACAGCCGCAGCATTTTCAGCTGGCAGACCTGCATAG
CCAATTTCAGCTCAAGCCATTCTTGGACTCCGGACTGCAGGATTTTTGGGGAGTGGGAGCGCTGACCATTTCGGAGTCAG
CCCTAGGCAACCAGCAGCTCAATATCCTGTCGGCTGAGCTGCTCTTCCGCGACCACAGCTATGTCGTATGGCCGGGCAAT
ACCATCTGTAAGCCGCGCTCCTTCGCCTCTGCCTGGCAGGATCAGAGCCGGCCGTTCAATGTCTACCTGGGGCTGAAAAA
GCTGGACACGATAGAGTCCAATGTGGCCGTCGTGCCACAGCTTGAGGATGGCGCAGGGCGGAACGTCCGCTGCGTGACGA
CCCAGCAGGGAGACAAGCACGCGGACTTATATTCGGATGGGCCTGAAGCCGAGATCCAGAGCCTGCACTACGTGCTGCAG
GTGCTGTGGGAGAGCGAGGTTGAAAAGCTGACGGATTACAATATCCTGCCCATCGCCCGGCTGGAGCGCCAGGGCGAGGT
GGTTCAGCTGTCCAAGAGCTTCATTCCGCCGTGCTACATCATGGGCGGCTCCGAGACCCTGATGCGGGTGGTCCGGGATG
TCCGGGACGATCTGGCGGGGCGCGCCCGCCAACTGGAGGCCTATAAAAGCCCGCGCGAAATCCGCAAGGCGGAGTTCGAT
GCCAGCTTTCTGATGTTTCTGCTGGCCCTGCGCACCCTCAACCGCTACGTGCCGCTGCTGTACCAGCTGACCGAATCGCC
GCAGGTCCATCCGCGCAAGGTCTACGACATGCTGCGGCAGATCGTCGGCGAGCTGTCCACCTTCAGCGAGCGCTGCGACA
TGCTGGGCTCCAGCGGCGAAAACAGCCCGGGGCTCCCCCCCTACCGCCATCAGGACATCGCGCCGGGGCTGTTAACCGTA
CGCGATCTGATTATTCGTTTATTGAATGAAATATCGATCGGACCCGATTTCCTGATCGCCCTGGAGCCGAGCGGGGAGTA
CCTGACGGCGCGGCTCCCCAAGAGCCTGCTGGAAGATCGTAACCGCTTCTACCTGATCGTCCGCAGTGACATGGCGCCGG
ATACCCTGCAGGCCGCCTTCCGGGCCCGCGCCAGGCTGGCCGAGGCCGACGCATTGCCCTTACTGATCCAGCGCGCCTTG
CCGGGGATCACGCTGACGCCGCTATCGTCCGTTCCCGAAGGCTTGCCCCGGCGCTCCTGCTCGTTTTATTTCCAGATCGA
TACCCAAAGTGAAGCCTGGCGGCAGGTCGCCGAGAGTTGCCACGTCGCGTTCAACTGGTTCGATGCCCCAGATGACCTCA
AAGTAGAATTGGTAGGAGTGAGCCGGTGA