Detailed information of component protein
Summary
External database links
Locus tag (Gene) | ETAE_RS11245 |
Coordinate (Strand) | 2555898..2557385 (+) |
NCBI ID | WP_012849259.1 |
RefSeq | NC_013508 |
Uniprot ID | A0A411H509_9GAMM, D0ZB31_EDWTE, Q6EE20_EDWTA, A0A0H3DSD6_EDWTF |
KEGG ID | etd:ETAF_2200, etr:ETAE_2430 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
VipB | PF05943.14 | 7e-138 | 69..369 |
VipB_2 | PF18945.2 | 5.5e-46 | 379..489 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-495 | MSEQNLPESSAAESAALEGGLLDSIIAETRMARSDLEKARARDLLGEWVSEVLSGTVTVSGDVLASIEARIAQIDALLSAQLSAIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLNVSRADLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAAMIGDYEFSNHPEDLFLLEEISHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIALALPHVLGRLPYGATTVPVESFNFEENVSGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAAIRGAEGGGLVEGLPAHTFTTDDGEVELKCPTEVAITDRREKELAELGFIALTHCKGTDYAAFFSTQSVQKPKEYDSDSANANARISCQLQYIMATSRFAHYLKSMVRDKIGSFMSRSECEYFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLTASLRLVADLPPPAQG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9773 | - | - |
Protein sequence: 496 a.a.
>T6CP003807 NC_013508:2555898-2557385 [Edwardsiella tarda EIB202] [TssC]
MSEQNLPESSAAESAALEGGLLDSIIAETRMARSDLEKARARDLLGEWVSEVLSGTVTVSGDVLASIEARIAQIDALLSA
QLSAIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLNVSRADLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAA
MIGDYEFSNHPEDLFLLEEISHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIAL
ALPHVLGRLPYGATTVPVESFNFEENVSGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAAIRGAEGGGLVEGLPAHTFTT
DDGEVELKCPTEVAITDRREKELAELGFIALTHCKGTDYAAFFSTQSVQKPKEYDSDSANANARISCQLQYIMATSRFAH
YLKSMVRDKIGSFMSRSECEYFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLT
ASLRLVADLPPPAQG*
MSEQNLPESSAAESAALEGGLLDSIIAETRMARSDLEKARARDLLGEWVSEVLSGTVTVSGDVLASIEARIAQIDALLSA
QLSAIMHEPAFQKLEGSWRGLHYLVHQSETGTGLKIRMLNVSRADLIRDFKSAAEFDQSALFKKVYEEEYGTFGGAPFAA
MIGDYEFSNHPEDLFLLEEISHVAAAAHAPFLSAASAGMFGLDSLTELSIPRDLAKGFDTVEYAKWKSLRQSEDARYIAL
ALPHVLGRLPYGATTVPVESFNFEENVSGKEHGKYLWLNAAYALGTRLTQAYAKYGWCAAIRGAEGGGLVEGLPAHTFTT
DDGEVELKCPTEVAITDRREKELAELGFIALTHCKGTDYAAFFSTQSVQKPKEYDSDSANANARISCQLQYIMATSRFAH
YLKSMVRDKIGSFMSRSECEYFLNQWISNYVVGSDDAGQDIKAKYPLREARIDVSDIPGKPGFYKAVAYLKPHFQLEGLT
ASLRLVADLPPPAQG*
Nucleotide sequence: 1488 bp
>T6CP003807 NC_013508:2555898-2557385 [Edwardsiella tarda EIB202] [TssC]
ATGAGCGAACAGAACTTGCCAGAAAGTAGCGCCGCCGAGAGCGCTGCGCTAGAGGGCGGCCTGCTGGATAGCATCATTGC
GGAAACCCGGATGGCACGCAGTGATCTGGAGAAGGCGCGGGCCCGAGATCTGCTGGGGGAATGGGTCAGTGAGGTTCTGT
CGGGCACCGTGACGGTATCCGGTGATGTGCTGGCCAGCATTGAGGCGCGTATCGCCCAGATCGATGCGCTGCTCTCCGCC
CAGCTCTCCGCCATTATGCATGAGCCGGCGTTCCAAAAGCTGGAGGGGTCATGGCGTGGGCTGCATTACCTGGTGCATCA
AAGCGAAACCGGTACCGGCCTGAAAATCCGCATGCTGAACGTCAGCCGAGCCGATCTGATCCGCGACTTTAAGAGCGCCG
CCGAGTTTGATCAGAGCGCGCTGTTCAAGAAAGTCTATGAGGAGGAGTACGGTACCTTTGGCGGCGCCCCCTTTGCGGCC
ATGATCGGGGATTATGAGTTCAGCAACCACCCGGAAGATCTGTTCCTGCTGGAGGAGATCTCACACGTTGCGGCGGCGGC
CCATGCCCCCTTCCTCTCTGCCGCCAGCGCAGGAATGTTCGGCCTGGATAGCCTGACAGAGCTGTCGATCCCCCGGGATC
TGGCCAAGGGCTTTGATACGGTTGAGTATGCCAAGTGGAAATCGCTGCGCCAGTCGGAGGATGCCCGCTATATCGCCCTG
GCCCTACCCCACGTGCTTGGCCGACTGCCTTACGGCGCGACGACGGTGCCGGTCGAGTCATTCAATTTTGAGGAGAATGT
CAGCGGCAAGGAGCATGGCAAATATCTGTGGCTGAATGCCGCCTATGCGCTGGGCACCCGCCTGACTCAGGCCTATGCCA
AATATGGCTGGTGCGCCGCCATCCGGGGTGCCGAAGGGGGAGGCCTGGTGGAGGGACTGCCGGCGCACACCTTTACCACC
GATGATGGCGAAGTCGAGCTCAAGTGCCCCACCGAAGTGGCCATTACCGATCGCCGAGAGAAGGAGCTGGCCGAGCTGGG
ATTTATCGCCCTGACCCACTGTAAGGGGACCGACTATGCCGCCTTCTTTTCGACCCAGTCGGTGCAAAAGCCCAAGGAAT
ATGACAGTGACTCCGCCAATGCCAACGCCAGGATCTCCTGCCAGCTGCAATATATTATGGCCACCTCACGCTTTGCCCAT
TATTTAAAATCGATGGTCCGCGACAAAATCGGCAGCTTTATGAGCCGCAGTGAATGTGAATATTTTCTCAATCAGTGGAT
CAGTAATTATGTGGTCGGCTCGGATGATGCTGGCCAGGATATCAAGGCGAAATATCCATTACGGGAAGCCCGCATTGATG
TCAGTGATATTCCGGGCAAACCGGGTTTCTATAAGGCGGTAGCCTATTTAAAACCCCATTTCCAACTGGAGGGGCTGACC
GCGTCTTTACGTCTGGTCGCCGATCTGCCGCCGCCGGCGCAAGGCTAA
ATGAGCGAACAGAACTTGCCAGAAAGTAGCGCCGCCGAGAGCGCTGCGCTAGAGGGCGGCCTGCTGGATAGCATCATTGC
GGAAACCCGGATGGCACGCAGTGATCTGGAGAAGGCGCGGGCCCGAGATCTGCTGGGGGAATGGGTCAGTGAGGTTCTGT
CGGGCACCGTGACGGTATCCGGTGATGTGCTGGCCAGCATTGAGGCGCGTATCGCCCAGATCGATGCGCTGCTCTCCGCC
CAGCTCTCCGCCATTATGCATGAGCCGGCGTTCCAAAAGCTGGAGGGGTCATGGCGTGGGCTGCATTACCTGGTGCATCA
AAGCGAAACCGGTACCGGCCTGAAAATCCGCATGCTGAACGTCAGCCGAGCCGATCTGATCCGCGACTTTAAGAGCGCCG
CCGAGTTTGATCAGAGCGCGCTGTTCAAGAAAGTCTATGAGGAGGAGTACGGTACCTTTGGCGGCGCCCCCTTTGCGGCC
ATGATCGGGGATTATGAGTTCAGCAACCACCCGGAAGATCTGTTCCTGCTGGAGGAGATCTCACACGTTGCGGCGGCGGC
CCATGCCCCCTTCCTCTCTGCCGCCAGCGCAGGAATGTTCGGCCTGGATAGCCTGACAGAGCTGTCGATCCCCCGGGATC
TGGCCAAGGGCTTTGATACGGTTGAGTATGCCAAGTGGAAATCGCTGCGCCAGTCGGAGGATGCCCGCTATATCGCCCTG
GCCCTACCCCACGTGCTTGGCCGACTGCCTTACGGCGCGACGACGGTGCCGGTCGAGTCATTCAATTTTGAGGAGAATGT
CAGCGGCAAGGAGCATGGCAAATATCTGTGGCTGAATGCCGCCTATGCGCTGGGCACCCGCCTGACTCAGGCCTATGCCA
AATATGGCTGGTGCGCCGCCATCCGGGGTGCCGAAGGGGGAGGCCTGGTGGAGGGACTGCCGGCGCACACCTTTACCACC
GATGATGGCGAAGTCGAGCTCAAGTGCCCCACCGAAGTGGCCATTACCGATCGCCGAGAGAAGGAGCTGGCCGAGCTGGG
ATTTATCGCCCTGACCCACTGTAAGGGGACCGACTATGCCGCCTTCTTTTCGACCCAGTCGGTGCAAAAGCCCAAGGAAT
ATGACAGTGACTCCGCCAATGCCAACGCCAGGATCTCCTGCCAGCTGCAATATATTATGGCCACCTCACGCTTTGCCCAT
TATTTAAAATCGATGGTCCGCGACAAAATCGGCAGCTTTATGAGCCGCAGTGAATGTGAATATTTTCTCAATCAGTGGAT
CAGTAATTATGTGGTCGGCTCGGATGATGCTGGCCAGGATATCAAGGCGAAATATCCATTACGGGAAGCCCGCATTGATG
TCAGTGATATTCCGGGCAAACCGGGTTTCTATAAGGCGGTAGCCTATTTAAAACCCCATTTCCAACTGGAGGGGCTGACC
GCGTCTTTACGTCTGGTCGCCGATCTGCCGCCGCCGGCGCAAGGCTAA