Detailed information of component protein
Summary
| Component ID | T6CP003754 |
| Component protein type | TssJ |
| T6SS ID (Type) | T6SS00367  (Type i1) |
| Strain | Escherichia coli O111:H- str. 11128 |
| Replicon | chromosome |
| Sequence | Protein sequence (175 a.a.); Nucleotide sequence (525 bp) |
| Reference | - |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | ECO111_RS01175 |
| Coordinate (Strand) | 253834..254358 (-) |
| NCBI ID | WP_001080149.1 |
| RefSeq | NC_013364 |
| Uniprot ID | A0A0E0Y3I7_ECO1C, L3QIQ2_ECOLX, A0A222QGU2_ECOLX, V0YIZ7_ECOLX, A0A7U9P168_ECOLX, W1ES33_ECOLX, A0A7U6JSK9_9ESCH, A0A3D8XN76_9ENTR, A0A6I4KN30_9ENTR, A0A6H2GI60_9ESCH, A0A7M3S2E7_ECOHS, B8ZYU5_ECOLX, E0J661_ECOLW, A0A170V2Y9_KLEOX, B7LHD2_ECO55, A0A236UEC4_SHIBO, A0A7Z1EPD9_SHIFL, A0A7Z8FFF8_SHISO, A0A1X3JMG5_ECOLX, F4V9Z9_ECOLX, A0A1X3IBC4_ECOLX, E9XQ99_ECOLX, E6BQF9_ECOLX, E1IY72_ECOLX, E1JBR7_ECOLX, D8E9T8_ECOLX, D7XRE2_ECOLX, I2UQI0_ECOLX, I2WT34_ECOLX |
| KEGG ID | elw:ECW_m0225, eck:EC55989_0226, ecx:EcHS_A0232, esl:O3K_20450 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS-SciN | PF12790.9 | 8.9e-23 | 45..164 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 175 a.a.
>T6CP003754 NC_013364:c254358-253834 [Escherichia coli O111:H- str. 11128] [TssJ]
MNRKAFLACVLMCVILTGCETAKKISEVIKNPDIQVGSLKEQPSEITVTLLTEPDTNTNAEGESAAVDVQLVYLTDDSKL
LAADYDQIASTPLPDVLGKNYIDHQDFNLLPDTIKTLPPVKLDEKTQFIGVVAYFSDDQATEWKQIETVEGTGHHYRLLV
HVRQSSIEMKKEDE*
MNRKAFLACVLMCVILTGCETAKKISEVIKNPDIQVGSLKEQPSEITVTLLTEPDTNTNAEGESAAVDVQLVYLTDDSKL
LAADYDQIASTPLPDVLGKNYIDHQDFNLLPDTIKTLPPVKLDEKTQFIGVVAYFSDDQATEWKQIETVEGTGHHYRLLV
HVRQSSIEMKKEDE*
Nucleotide sequence: 525 bp
>T6CP003754 NC_013364:c254358-253834 [Escherichia coli O111:H- str. 11128] [TssJ]
ATGAACAGGAAGGCGTTTCTGGCCTGCGTGCTGATGTGCGTCATATTAACCGGCTGCGAAACGGCGAAAAAAATCAGTGA
GGTGATCAAAAACCCGGATATCCAGGTCGGGAGCCTGAAGGAGCAACCTTCGGAAATAACCGTCACCCTGCTGACCGAAC
CGGACACCAATACCAATGCGGAAGGTGAATCAGCCGCCGTGGATGTGCAACTGGTGTACCTGACTGACGACTCAAAATTG
CTGGCAGCCGACTATGACCAGATAGCCAGTACGCCGCTACCGGATGTGCTGGGTAAAAACTATATCGACCACCAGGATTT
CAACCTGTTGCCGGACACCATCAAAACCCTGCCGCCGGTAAAGCTGGATGAGAAAACGCAGTTTATTGGTGTCGTGGCCT
ATTTCTCCGATGACCAGGCCACTGAATGGAAACAAATCGAGACGGTGGAAGGAACCGGCCACCATTACCGCCTGCTGGTG
CATGTACGTCAAAGCAGCATCGAAATGAAAAAAGAGGATGAATAA
ATGAACAGGAAGGCGTTTCTGGCCTGCGTGCTGATGTGCGTCATATTAACCGGCTGCGAAACGGCGAAAAAAATCAGTGA
GGTGATCAAAAACCCGGATATCCAGGTCGGGAGCCTGAAGGAGCAACCTTCGGAAATAACCGTCACCCTGCTGACCGAAC
CGGACACCAATACCAATGCGGAAGGTGAATCAGCCGCCGTGGATGTGCAACTGGTGTACCTGACTGACGACTCAAAATTG
CTGGCAGCCGACTATGACCAGATAGCCAGTACGCCGCTACCGGATGTGCTGGGTAAAAACTATATCGACCACCAGGATTT
CAACCTGTTGCCGGACACCATCAAAACCCTGCCGCCGGTAAAGCTGGATGAGAAAACGCAGTTTATTGGTGTCGTGGCCT
ATTTCTCCGATGACCAGGCCACTGAATGGAAACAAATCGAGACGGTGGAAGGAACCGGCCACCATTACCGCCTGCTGGTG
CATGTACGTCAAAGCAGCATCGAAATGAAAAAAGAGGATGAATAA