Detailed information of component protein
Summary
| Component ID | T6CP003518 |
| Component protein type | TssM |
| T6SS ID (Type) | T6SS00346  (Type i4b) |
| Strain | Edwardsiella ictaluri 93-146 |
| Replicon | chromosome |
| Sequence | Protein sequence (1261 a.a.); Nucleotide sequence (3783 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 2647935..2651717 (+) |
| NCBI ID | WP_015872020.1 |
| RefSeq | NC_012779 |
| Uniprot ID | C5BAE9_EDWI9 |
| KEGG ID | eic:NT01EI_2751 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-6 | MKRIFK |
| Transmembrane helix | 7-26 | WIAIALILIMLAMLCWLLTF |
| Outside | 27-29 | WQR |
| Transmembrane helix | 30-52 | WPAAAAWVLFLAILAGALLTRYI |
| Inside | 53-417 | WRKVRAWRTRSLEAEPVKKNSATERHPVTLQRQWRAATTLLRHSQLRRFRHPLQVLPWFMMLGRPGSGKSALLTQSGLAAPLDLPHEMHDGKAPVGWWYFDKAVILDISGQFVQPEASQDTRTTWNRMLDLLGRDRAQAGLSGLVLTVSAQTLLSANGEDLIDEGRLIRTRIEQLIRLFDRRFPVYVLVTQIDSLYGMEAWSHLLPQEVQEQAMGHIVDEPEIGHDVRDVIDIVLSKVNSRLKTMQLAMILRHPDADPALLMFPTELARLAEPLKRYVQHALGDSPYLESPILRGAFFTSAVQEGNTRSGSRDQQEIALQEAAHDTVKQGIFVRDLFNRVLPADRDLSRPVAVTSPWRRLNRHLG |
| Transmembrane helix | 418-440 | LFAWWLCVAAALGYLGVSAVYWQ |
| Outside | 441-1260 | RTLDDLRQRYPETMIMNNTLPHDMRIMIAQRDAIYWLEKRNAQWASRVLAFQHQLQYVEADAKSQYVNDFSKYILPSLDKAIRQSTTEENITSHPDGLVNAFQIEARRANLLRARLRGSSYGALMAMPPIPTPSLQLLYPTLDSNTVSRFNDLFLSQLAWSSDLQLQNSRLLHLQDRLRQLAAQSATLDWVIPWANAQPDLASVTLTDFWQGSLRPNKLPEVAAAYTLNGERRIHSFLSEIRNSMPNDSAFDKKLTVFRQEYAQKRLQAWQDFVGQFSQGEQILAGQGEWQSTIGRLPHDDNPYLRLARRLLSEFADMPDDLRPGWLRVLPQWLEVRQRAHQQAIVRVPGLVSDMGSMILRGAAQKGGLDQPRSQLVSRLDAIRLYQEYQAAITQAMNSVVTSQAQATKVAADFHGFDSQQNGQSPLQTAYARLISLRSLLGHNRPDEQLTWGLMAGSLQLVIRYADQQASCFLQNAWQDNVIAPSRWTLNQADRADKLYGENGVIWTFLSGPIKPFIQRNDSGWQVVDTLGQSVPFTADFLPFINQALIRQVDLKAGKIEQHQKQQLATLAQQQQKQQWQTLAAESAEKLAELNTTANTLKANSYPVSLMGLPTDVNSDARAKVVGTLLTMQCSNATLRLNNLNFAVMQSIQWSQHQCGQVTLQIRLPAFTLTRSYPGPRGFVNFLRDFPGGARRFTPADFPADKNRMAAVGITHITVRYRISGQETLLQDAAQLIQTESDIQSAQSRQQQAQQALITLNQPTAPEIPPAVDQLPVLNVMGVPERIGQCWRGDVRLARENGSIGQLMSELVAKQLTDKP |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9926 | - | - |
Protein sequence: 1261 a.a.
Nucleotide sequence: 3783 bp