Detailed information of component protein


Summary

Component ID T6CP003517
Component protein type TssK
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (463 a.a.); Nucleotide sequence (1389 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11950
Coordinate (Strand) 2645903..2647291 (+)
NCBI ID WP_015872018.1
RefSeq NC_012779
Uniprot ID C5BAE7_EDWI9
KEGG ID eic:NT01EI_2749
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 4.8e-99 19..460
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-462 MKIHKPIYWHQGMFLQPQHFQLADLHTQFQIKPFLNSGLQDFWGVGALTISESALGNQLLNILSAELIFQDQSYVIWPGNTILKPRSFASAWLDQSRPFNVYLGLKKQDTIESNVAVVPQLEDGADRNVRCVTTQQGNKHADLYSDGPEAEIQSLHYVLQVLWENEVEQLTDYNILPIARLERKGELIQQSRHFIPPCYIMGGSEPLMRVVRDVRDDLAGRARQLEAYKSPREIRKAEFDASFLMFLLALRTLNRYVPLLYQLTESPLVHPRKVYDVLRQIVGELSTFSENCDMLGSTDENSPGLPPYRHQDLAPGLLTVRDLIIRLLNEISIGPDFLITLEPSGEYLTAQLPNSLLEERNRFYLIVRSDMAPDTLQDSFRARARLAEASAMPLLIQRALPGITLTPLSSVPEGLPRRSCSFYFKIDSQSEAWRQAAQSCHIAFSWFDAPDDVKVELVGVNR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9879 - -


  Protein sequence: 463 a.a.    

>T6CP003517 NC_012779:2645903-2647291 [Edwardsiella ictaluri 93-146] [TssK]
MKIHKPIYWHQGMFLQPQHFQLADLHTQFQIKPFLNSGLQDFWGVGALTISESALGNQLLNILSAELIFQDQSYVIWPGN
TILKPRSFASAWLDQSRPFNVYLGLKKQDTIESNVAVVPQLEDGADRNVRCVTTQQGNKHADLYSDGPEAEIQSLHYVLQ
VLWENEVEQLTDYNILPIARLERKGELIQQSRHFIPPCYIMGGSEPLMRVVRDVRDDLAGRARQLEAYKSPREIRKAEFD
ASFLMFLLALRTLNRYVPLLYQLTESPLVHPRKVYDVLRQIVGELSTFSENCDMLGSTDENSPGLPPYRHQDLAPGLLTV
RDLIIRLLNEISIGPDFLITLEPSGEYLTAQLPNSLLEERNRFYLIVRSDMAPDTLQDSFRARARLAEASAMPLLIQRAL
PGITLTPLSSVPEGLPRRSCSFYFKIDSQSEAWRQAAQSCHIAFSWFDAPDDVKVELVGVNR*

  Nucleotide sequence: 1389 bp    

>T6CP003517 NC_012779:2645903-2647291 [Edwardsiella ictaluri 93-146] [TssK]
ATGAAAATTCACAAACCAATTTATTGGCATCAGGGCATGTTTTTACAGCCGCAGCATTTTCAGCTGGCAGACCTGCATAC
TCAGTTTCAGATCAAGCCATTCCTGAATTCCGGACTGCAAGATTTTTGGGGAGTGGGAGCGCTGACCATTTCAGAGTCAG
CCCTGGGTAACCAGCTGCTTAATATCCTGTCGGCTGAGCTGATCTTCCAGGATCAAAGCTATGTCATATGGCCGGGTAAC
ACCATCCTTAAGCCACGATCCTTCGCCTCTGCCTGGCTGGATCAGAGCCGACCGTTCAATGTCTACCTGGGGCTAAAAAA
GCAGGACACAATAGAGTCCAATGTGGCCGTCGTGCCACAGCTTGAGGATGGCGCAGACCGGAATGTCCGTTGCGTGACGA
CCCAACAGGGAAACAAGCACGCTGATTTATATTCGGATGGGCCCGAAGCCGAGATCCAGAGCCTGCACTACGTACTGCAG
GTGCTGTGGGAAAATGAGGTTGAACAGCTGACGGATTACAATATCCTGCCAATCGCCCGGTTGGAGCGTAAGGGAGAGCT
GATTCAGCAGTCCAGACACTTCATTCCGCCGTGTTACATCATGGGTGGCTCCGAGCCCCTGATGCGGGTGGTACGGGATG
TACGGGACGATCTGGCAGGACGCGCCCGCCAGCTGGAGGCCTATAAAAGTCCGCGCGAAATCCGCAAGGCGGAGTTTGAT
GCCAGCTTTCTGATGTTTCTGCTGGCCCTGCGCACCCTCAACCGCTATGTACCGCTGCTGTATCAGCTGACCGAATCACC
GTTGGTCCATCCGCGCAAAGTCTACGACGTACTGCGGCAGATCGTCGGCGAGCTGTCCACCTTCAGCGAGAACTGCGACA
TGCTGGGATCCACGGATGAAAACAGCCCGGGGCTCCCACCCTACCGCCATCAGGATCTCGCTCCGGGTCTCTTAACGGTA
CGCGATCTGATTATTCGGCTATTGAATGAAATATCGATCGGACCTGATTTCCTGATCACCCTTGAGCCAAGCGGAGAGTA
TCTGACGGCACAGCTACCCAATAGTCTGCTGGAGGAGCGTAACCGTTTCTACCTGATCGTCCGCAGCGACATGGCACCGG
ATACCCTGCAGGACTCGTTCCGGGCCAGGGCCAGACTGGCCGAGGCCAGCGCAATGCCCTTACTGATCCAGCGAGCCTTA
CCGGGGATCACGCTGACGCCGCTATCGTCAGTTCCCGAGGGCTTGCCCCGGCGATCCTGCTCATTTTATTTCAAGATCGA
CTCCCAGAGTGAAGCCTGGCGGCAGGCCGCCCAGAGTTGCCATATTGCATTCAGCTGGTTCGATGCCCCAGATGACGTCA
AAGTAGAATTGGTAGGAGTGAACCGGTGA