Detailed information of component protein


Summary

Component ID T6CP003515
Component protein type TssA
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (357 a.a.); Nucleotide sequence (1071 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11940
Coordinate (Strand) 2644120..2645190 (+)
NCBI ID WP_015872016.1
RefSeq NC_012779
Uniprot ID C5BAE5_EDWI9
KEGG ID eic:NT01EI_2747
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 8.4e-39 10..133
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-356 MNILDMARLLAPISEHHPAGEDISFDPLYDQIREARRADADYLGQGEWVSSLKQSNWAEVIRLASEALETRSKDLQLAVWLCEALVQRHGLPGLQEGLLLLDNLLEHYWAEMYPELTEGELEGRVSRLEWLNQVLPPVLGLLPLTAAQDRRAYGWLDWQASREVDNLKRLNNEAAQTALGEGKTDPDAWDLAVSHTPGTFYLTLQSDLQQAISAFQGLSQRLDPLFGRDVPRISNVAERLEQMLRLVTRLVEGKGMTVTNGTGENPLTPAGTEAIPVVTTSSPGVAGAPRTREEAIQQLNGIATFFRETEPHSPVSYIVDKAVRWGNMRLDEWIREVVDDNGTRRMLKGVLGYDEE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9936 - -


  Protein sequence: 357 a.a.    

>T6CP003515 NC_012779:2644120-2645190 [Edwardsiella ictaluri 93-146] [TssA]
MNILDMARLLAPISEHHPAGEDISFDPLYDQIREARRADADYLGQGEWVSSLKQSNWAEVIRLASEALETRSKDLQLAVW
LCEALVQRHGLPGLQEGLLLLDNLLEHYWAEMYPELTEGELEGRVSRLEWLNQVLPPVLGLLPLTAAQDRRAYGWLDWQA
SREVDNLKRLNNEAAQTALGEGKTDPDAWDLAVSHTPGTFYLTLQSDLQQAISAFQGLSQRLDPLFGRDVPRISNVAERL
EQMLRLVTRLVEGKGMTVTNGTGENPLTPAGTEAIPVVTTSSPGVAGAPRTREEAIQQLNGIATFFRETEPHSPVSYIVD
KAVRWGNMRLDEWIREVVDDNGTRRMLKGVLGYDEE*

  Nucleotide sequence: 1071 bp    

>T6CP003515 NC_012779:2644120-2645190 [Edwardsiella ictaluri 93-146] [TssA]
ATGAATATCTTGGATATGGCGCGTTTACTGGCTCCCATCAGTGAGCACCATCCGGCGGGAGAGGATATCAGCTTCGACCC
ACTATACGACCAGATTCGGGAAGCCCGCCGGGCCGACGCTGACTACCTGGGACAGGGAGAGTGGGTCAGCTCACTCAAAC
AGTCAAACTGGGCCGAGGTGATCCGCCTGGCCAGCGAGGCGCTGGAGACACGCAGCAAAGATCTGCAGCTGGCAGTGTGG
CTGTGCGAGGCTCTGGTGCAACGGCATGGATTGCCAGGACTGCAGGAAGGGCTGCTCTTACTGGATAACCTGCTGGAGCA
CTATTGGGCGGAAATGTATCCGGAGCTGACTGAGGGGGAGCTGGAAGGCCGGGTGAGCCGTCTGGAGTGGCTCAACCAGG
TCTTACCCCCGGTGCTGGGCTTACTCCCCCTGACGGCAGCACAGGACAGACGGGCATATGGCTGGCTGGACTGGCAGGCC
TCCCGGGAGGTCGATAACCTGAAGCGGCTGAACAATGAAGCGGCTCAGACAGCCTTAGGCGAAGGAAAAACGGATCCGGA
CGCGTGGGATCTCGCTGTCAGTCATACGCCAGGCACCTTTTATCTGACGTTACAGAGCGATCTTCAACAAGCCATCAGTG
CATTCCAGGGATTATCCCAGCGGCTCGATCCGCTATTTGGACGGGATGTCCCGCGGATAAGCAATGTGGCTGAGCGGCTG
GAGCAGATGCTCCGGCTGGTGACGCGTCTGGTGGAGGGAAAAGGGATGACGGTTACCAACGGCACCGGGGAGAACCCGCT
GACACCGGCAGGCACGGAGGCGATCCCCGTGGTCACTACATCCTCCCCCGGCGTGGCCGGCGCACCCAGAACCCGCGAGG
AGGCCATTCAGCAACTCAACGGTATTGCCACGTTTTTCAGGGAGACAGAGCCGCACAGCCCCGTCTCCTACATTGTGGAT
AAAGCTGTCCGCTGGGGCAATATGAGACTGGATGAATGGATCCGGGAGGTCGTGGATGACAACGGTACCCGGCGGATGCT
CAAGGGTGTATTGGGTTATGATGAAGAATAA