Detailed information of component protein


Summary

Component ID T6CP003514
Component protein type TssI
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (662 a.a.); Nucleotide sequence (1986 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11930
Coordinate (Strand) 2641724..2643709 (+)
NCBI ID WP_015872014.1
RefSeq NC_012779
Uniprot ID C5BAE3_EDWI9
KEGG ID eic:NT01EI_2745
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 7.3e-90 30..330
Phage_base_V PF04717.14 3.9e-11 383..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-661 MELTSDNRLLSLSTPLGKNTLQVVQCRGEESVSDLYRFELELFSTEPTLEWQKLVGQAAALRLALPDGQTRYWHGVIGQASYRGAEQHGYAYYAELVPHLAWLQHAQECQIFQEKTVPQIIETVLKARGISDFRLSLSQHYAPREYCVQYRESDLSFISRLMEEEGIFYWFDHSESHHVMVLADSNAAVQPCKTHSDIVYRPKHMSESGDDIQLWMPSLSVVPANVFLNTYTFEQPTASLLTSTASVARQGKLSDVAVYDFTDGYTQTREGERRAKLRMEGLEAMQARIEGGGRCRTLAPGYWFSLQKHFRKDCNDDYLLLSVRHEIVNNLPWQNQEVNYQNHFVCLPKSLPYRPLSQAPRPVIHGVQTAVVTGPQGEEIHTDLYGRVKVHFHWDRLGKQDDKSSCWIRVAQGWAGLGWGGMQLPRVGQEVIVDFIDGNPDAPLITGRVYNANQTPPFKLPDNKTQSGIQTRSTPNGNAEHFSLLRFEDKMGAEEVFMQSARDFRRLVKHDDELTVEHDRRVTIKNDCSETVSEGNYLQSITKGKHTRMIEGDTLTEVKSGNSTLQVDRGDHATRVSAGSLHLEAGTSITLSVGSNRIVIDSSGVLIEGMDITVKGKQSIDASGLSVAIKGTQSASLSSSAEVEVSSSVMTSIKGGIVKIN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9842 - -


  Protein sequence: 662 a.a.    

>T6CP003514 NC_012779:2641724-2643709 [Edwardsiella ictaluri 93-146] [TssI]
MELTSDNRLLSLSTPLGKNTLQVVQCRGEESVSDLYRFELELFSTEPTLEWQKLVGQAAALRLALPDGQTRYWHGVIGQA
SYRGAEQHGYAYYAELVPHLAWLQHAQECQIFQEKTVPQIIETVLKARGISDFRLSLSQHYAPREYCVQYRESDLSFISR
LMEEEGIFYWFDHSESHHVMVLADSNAAVQPCKTHSDIVYRPKHMSESGDDIQLWMPSLSVVPANVFLNTYTFEQPTASL
LTSTASVARQGKLSDVAVYDFTDGYTQTREGERRAKLRMEGLEAMQARIEGGGRCRTLAPGYWFSLQKHFRKDCNDDYLL
LSVRHEIVNNLPWQNQEVNYQNHFVCLPKSLPYRPLSQAPRPVIHGVQTAVVTGPQGEEIHTDLYGRVKVHFHWDRLGKQ
DDKSSCWIRVAQGWAGLGWGGMQLPRVGQEVIVDFIDGNPDAPLITGRVYNANQTPPFKLPDNKTQSGIQTRSTPNGNAE
HFSLLRFEDKMGAEEVFMQSARDFRRLVKHDDELTVEHDRRVTIKNDCSETVSEGNYLQSITKGKHTRMIEGDTLTEVKS
GNSTLQVDRGDHATRVSAGSLHLEAGTSITLSVGSNRIVIDSSGVLIEGMDITVKGKQSIDASGLSVAIKGTQSASLSSS
AEVEVSSSVMTSIKGGIVKIN*

  Nucleotide sequence: 1986 bp    

>T6CP003514 NC_012779:2641724-2643709 [Edwardsiella ictaluri 93-146] [TssI]
ATGGAATTAACGTCGGATAACCGGCTATTGTCCTTATCCACCCCGTTGGGCAAGAATACCTTACAGGTGGTGCAGTGCCG
TGGTGAAGAGTCGGTCTCCGACCTCTACCGCTTCGAGCTGGAGCTGTTCTCCACGGAGCCCACCCTGGAATGGCAAAAGC
TGGTCGGGCAGGCCGCCGCGCTGCGGCTGGCCTTACCGGATGGCCAGACCCGCTACTGGCATGGCGTGATCGGCCAGGCC
TCATACCGGGGTGCCGAGCAACACGGATATGCCTATTATGCCGAGCTGGTACCGCACCTGGCCTGGCTGCAGCACGCGCA
GGAGTGTCAGATCTTCCAAGAGAAGACGGTTCCGCAGATTATTGAAACCGTACTTAAGGCTCGGGGCATCAGCGATTTTC
GTCTATCCCTGTCGCAACACTACGCCCCCCGGGAATATTGCGTACAGTATCGCGAATCGGACCTCAGCTTTATTAGCCGG
CTGATGGAAGAAGAGGGAATCTTCTACTGGTTCGATCACAGCGAAAGCCACCATGTGATGGTATTGGCCGACAGCAACGC
CGCGGTTCAGCCCTGCAAGACGCACTCAGATATTGTCTACCGGCCAAAGCATATGAGTGAGTCCGGCGATGATATTCAGT
TGTGGATGCCCTCTCTCTCGGTCGTGCCGGCCAACGTCTTCCTAAACACCTATACCTTTGAACAGCCTACCGCCAGTTTG
CTGACATCCACTGCCTCGGTGGCCAGACAGGGCAAATTGAGTGACGTGGCGGTCTATGATTTTACGGACGGCTATACGCA
GACCCGGGAGGGCGAACGGCGAGCCAAGCTGAGAATGGAGGGACTGGAGGCGATGCAGGCCCGGATAGAGGGCGGCGGAC
GCTGCCGCACGCTGGCCCCGGGCTATTGGTTCAGCCTGCAAAAACATTTCCGCAAAGACTGTAACGATGACTATCTGCTG
TTAAGCGTACGACACGAGATCGTCAATAACCTGCCGTGGCAGAACCAAGAGGTGAACTACCAGAACCACTTCGTCTGCCT
GCCTAAATCCCTGCCCTACCGCCCCCTGAGCCAGGCTCCCCGTCCGGTGATCCATGGCGTACAGACGGCTGTGGTCACCG
GCCCGCAGGGTGAAGAGATCCACACCGATCTATATGGCCGGGTTAAGGTCCATTTTCACTGGGATCGACTGGGAAAGCAG
GATGATAAAAGCTCCTGCTGGATTCGGGTGGCGCAAGGCTGGGCTGGGCTGGGCTGGGGGGGGATGCAGCTACCCCGGGT
GGGACAGGAGGTGATTGTGGACTTTATCGATGGCAATCCGGACGCGCCCCTGATTACCGGCCGGGTCTATAACGCCAACC
AGACGCCCCCCTTCAAGTTGCCTGACAATAAGACCCAAAGCGGCATTCAGACCCGCAGCACGCCCAATGGCAATGCGGAG
CACTTCAGCCTGCTGCGCTTCGAGGACAAGATGGGCGCGGAAGAGGTGTTCATGCAGTCGGCGCGGGATTTTCGCCGTCT
GGTGAAGCACGATGACGAGCTTACGGTAGAGCATGACCGCCGGGTGACCATCAAGAATGACTGCTCTGAGACGGTCTCCG
AGGGGAACTACCTGCAGAGTATTACCAAGGGAAAGCATACCCGGATGATCGAGGGCGATACCTTAACGGAGGTCAAGTCA
GGCAACAGCACGTTACAGGTAGACAGGGGGGATCACGCCACCAGAGTCTCGGCAGGCAGCCTTCATCTGGAGGCCGGAAC
CTCGATAACCCTGAGCGTAGGCAGCAACCGTATCGTCATTGACAGCAGCGGCGTACTCATCGAGGGCATGGATATCACGG
TGAAGGGTAAACAGTCCATTGATGCCTCCGGCCTGAGCGTAGCAATAAAGGGAACCCAATCGGCCAGCCTGAGCAGTTCG
GCAGAGGTGGAGGTCTCCTCCTCCGTGATGACCTCCATCAAAGGCGGCATTGTCAAGATCAACTGA