Detailed information of component protein


Summary

Component ID T6CP003513
Component protein type TssH
T6SS ID (Type) T6SS00346 experimental (Type i4b)
Strain Edwardsiella ictaluri 93-146
Replicon chromosome
Sequence Protein sequence (874 a.a.); Nucleotide sequence (2622 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) NT01EI_RS11925
Coordinate (Strand) 2639112..2641733 (+)
NCBI ID WP_015872013.1
RefSeq NC_012779
Uniprot ID UPI0001A5AB89
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 4.1e-39 598..765
AAA_lid_9 PF17871.3 7.4e-27 359..450
ClpB_D2-small PF10431.11 5.2e-12 775..844
AAA PF00004.31 4.5e-09 219..349
Clp_N PF02861.22 2.3e-05 23..74
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-873 VNTDLKALTGKMNQTCHQALEAAAGLCLSRGHHEVEIEHVLLKLLETGNTDLDHLLQHYGIDAGRFQRDVEQALDRLKDGCSRQPVLSPHLPRLLSDAWLVASVNCGESQIRSGHLVMALLGDTVLLQLARALSPEWAAWSAADLLHKWPALVVGSREATARHAPGVHAGASPSPALDQYTVNLTERAHQHQLDPVLGRDGEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIADGEVPDSLRNVALRMLDLGLLQAGASVKGEFERRLKAVIDEVKACSEPVILFIDEAHTLIGAGGAAGQNDAANLLKPVLARGELRTIAATTWSEYKKYFEKDPALARRFQAIKVEEPSEEIAMVMLRGMLSKMRQHHQVRILDEAVTAAVRLSHRYLTGRQLPDKAVSVLDTACARIALGQRTLPAPVEDACRHLAHLQTEIALLEQEQAGGLDHGSRLMTLQEQARVAQDHYQTLEQRWIEECEQVAIIQALQVQLEQEDCPDRSEMLARREQAVLALEQMQGREPLVQTCVDESAIAAVISAWTGIPLGKMVQDELEMVRQLQTRLAERVIGQPYALDTIARGIRLSRAGLEDPDKPIGVFLLVGSSGVGKTETALALAETLYGGERNLITINLSEFQEAHTVSTLRGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLEVFFQVFDKGVMDDAEGREINFRNTVILLTSNVGSDTLMAYCQDGMAQPEPEQLCEVLRDDLTQAFKPAFLGRLQVVPYYPVRGTVLKQIIHLKLDKIARRFQRNHQATLHYDESLVDGIAKRCTQPDSGARLIDNILSAQLLSGMADAVLAQMAAGEPVSDITIAMDEHGRLTGSLEGSEGWN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9909 - -


  Protein sequence: 874 a.a.    

>T6CP003513 NC_012779:2639112-2641733 [Edwardsiella ictaluri 93-146] [TssH]
VNTDLKALTGKMNQTCHQALEAAAGLCLSRGHHEVEIEHVLLKLLETGNTDLDHLLQHYGIDAGRFQRDVEQALDRLKDG
CSRQPVLSPHLPRLLSDAWLVASVNCGESQIRSGHLVMALLGDTVLLQLARALSPEWAAWSAADLLHKWPALVVGSREAT
ARHAPGVHAGASPSPALDQYTVNLTERAHQHQLDPVLGRDGEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIA
DGEVPDSLRNVALRMLDLGLLQAGASVKGEFERRLKAVIDEVKACSEPVILFIDEAHTLIGAGGAAGQNDAANLLKPVLA
RGELRTIAATTWSEYKKYFEKDPALARRFQAIKVEEPSEEIAMVMLRGMLSKMRQHHQVRILDEAVTAAVRLSHRYLTGR
QLPDKAVSVLDTACARIALGQRTLPAPVEDACRHLAHLQTEIALLEQEQAGGLDHGSRLMTLQEQARVAQDHYQTLEQRW
IEECEQVAIIQALQVQLEQEDCPDRSEMLARREQAVLALEQMQGREPLVQTCVDESAIAAVISAWTGIPLGKMVQDELEM
VRQLQTRLAERVIGQPYALDTIARGIRLSRAGLEDPDKPIGVFLLVGSSGVGKTETALALAETLYGGERNLITINLSEFQ
EAHTVSTLRGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLEVFFQVFDKGVMDDAEGREINFRNTVILLTS
NVGSDTLMAYCQDGMAQPEPEQLCEVLRDDLTQAFKPAFLGRLQVVPYYPVRGTVLKQIIHLKLDKIARRFQRNHQATLH
YDESLVDGIAKRCTQPDSGARLIDNILSAQLLSGMADAVLAQMAAGEPVSDITIAMDEHGRLTGSLEGSEGWN*

  Nucleotide sequence: 2622 bp    

>T6CP003513 NC_012779:2639112-2641733 [Edwardsiella ictaluri 93-146] [TssH]
GTGAATACAGATTTGAAAGCCTTGACGGGGAAAATGAACCAGACCTGCCATCAAGCACTGGAGGCTGCAGCAGGCCTGTG
TCTGTCACGAGGCCATCACGAGGTCGAGATCGAACACGTGCTGCTCAAGTTGCTGGAGACGGGCAACACGGATCTGGATC
ACCTGCTGCAGCACTATGGGATCGACGCCGGCCGTTTTCAGCGGGACGTGGAGCAGGCGCTGGATCGCCTGAAGGACGGA
TGCAGCCGACAGCCGGTACTCTCCCCCCATCTGCCACGACTGTTGTCTGATGCCTGGCTGGTGGCCTCCGTCAACTGTGG
CGAGAGCCAGATCCGCAGCGGTCATCTGGTCATGGCCCTACTGGGTGACACGGTGCTGCTGCAGCTCGCCAGGGCGCTGT
CGCCAGAGTGGGCTGCGTGGTCTGCGGCAGATCTGCTGCACAAGTGGCCCGCGCTGGTCGTCGGCAGCCGGGAGGCGACG
GCGCGGCACGCGCCGGGAGTTCATGCGGGCGCCTCCCCCTCACCCGCTCTGGATCAATACACGGTAAACCTGACCGAGCG
GGCCCACCAGCATCAGCTGGACCCGGTTCTCGGGCGGGATGGCGAGATTCGGCAGATGATCGATATTTTGCTGCGCCGCA
GGCAGAACAACCCAATTCTTACCGGTGAGGCCGGCGTAGGGAAAACCGCCGTAGTGGAAGGGCTGGCCCTGCGCATTGCG
GACGGAGAGGTTCCGGATAGCCTGCGCAATGTTGCCCTACGGATGCTGGATCTGGGCCTGCTCCAGGCGGGTGCCAGTGT
CAAAGGGGAGTTTGAACGTCGTCTCAAAGCGGTCATCGACGAGGTGAAGGCCTGCAGTGAACCGGTCATTTTGTTCATCG
ATGAAGCCCATACGCTGATCGGGGCAGGAGGTGCAGCAGGTCAGAATGATGCCGCCAATCTGCTGAAGCCGGTACTGGCC
CGGGGAGAGCTGCGCACCATTGCCGCCACCACCTGGAGTGAATACAAAAAGTATTTCGAGAAAGATCCTGCTCTGGCGCG
GCGCTTCCAGGCCATCAAAGTGGAGGAGCCCAGCGAGGAGATCGCCATGGTGATGCTGCGTGGCATGCTGAGTAAAATGC
GCCAGCACCACCAGGTACGGATTCTGGATGAGGCGGTAACGGCCGCCGTCAGGCTGTCACACCGTTATTTGACCGGCAGA
CAGCTGCCGGATAAAGCGGTCAGCGTACTGGATACCGCCTGCGCCCGGATTGCGCTCGGGCAGCGTACCCTGCCAGCCCC
CGTCGAGGATGCATGCCGCCATCTGGCGCACCTCCAGACCGAAATTGCGCTGCTGGAGCAGGAGCAGGCCGGTGGCCTCG
ACCATGGTAGCCGGCTAATGACACTACAGGAGCAGGCCCGGGTCGCCCAAGACCATTATCAGACTCTGGAGCAGCGCTGG
ATCGAGGAGTGTGAGCAGGTCGCCATCATCCAGGCGCTGCAGGTGCAGTTGGAGCAGGAGGATTGTCCGGACCGCAGTGA
GATGCTGGCCCGACGGGAGCAGGCCGTTCTGGCGCTCGAGCAGATGCAGGGCCGGGAGCCGCTGGTGCAGACCTGTGTGG
ATGAGTCCGCCATTGCGGCGGTGATCTCGGCATGGACGGGGATCCCGCTGGGTAAAATGGTGCAGGATGAGCTGGAGATG
GTCCGCCAGCTACAGACACGGCTGGCAGAACGGGTCATCGGACAGCCCTATGCCCTGGATACCATCGCCCGGGGTATTCG
CCTGTCCCGTGCGGGACTGGAGGATCCGGACAAGCCCATCGGCGTCTTTCTGCTGGTCGGCTCCAGCGGCGTGGGAAAAA
CCGAGACCGCGCTGGCGCTGGCCGAAACCCTGTATGGCGGTGAGCGTAACCTGATCACCATCAACCTGTCGGAGTTTCAG
GAGGCCCATACCGTTTCGACGCTGCGGGGCTCACCGCCGGGCTATGTCGGCTATGGTGAAGGCGGTGTGCTGACAGAGGC
AGTACGCCGTAAGCCCTACAGCGTGGTCTTGCTGGATGAAGTAGAGAAAGCCCACCCGGATGTACTGGAGGTATTTTTTC
AGGTGTTTGACAAAGGGGTCATGGATGATGCCGAGGGGCGGGAGATCAACTTCCGCAATACCGTTATCCTGCTGACCTCC
AACGTCGGCAGCGATACCCTGATGGCCTACTGTCAGGACGGTATGGCACAGCCCGAACCGGAGCAGCTGTGTGAGGTGCT
GCGGGATGACCTGACCCAGGCCTTCAAGCCTGCCTTTCTCGGACGCCTGCAGGTGGTACCCTACTACCCGGTACGGGGTA
CGGTGCTGAAACAGATTATCCACCTCAAGCTGGATAAGATTGCCCGACGCTTTCAGCGCAATCATCAGGCCACTCTCCAT
TACGATGAGTCCCTGGTGGATGGCATTGCCAAACGCTGTACCCAGCCGGACAGCGGCGCCCGCCTGATCGATAATATTCT
GTCGGCCCAGCTGTTATCCGGTATGGCGGACGCGGTGCTGGCACAGATGGCCGCCGGCGAGCCGGTATCCGATATCACCA
TCGCGATGGATGAGCACGGCCGACTGACAGGATCGCTAGAGGGGAGTGAAGGATGGAATTAA